CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra005629.1-P	Field mustard	cytosol	67.64	54.86
CDY42092	Canola	cytosol	23.95	52.48
CDY12239	Canola	mitochondrion	45.95	50.9
CDX79454	Canola	cytosol	44.66	45.85
CDY15357	Canola	cytosol, nucleus, plastid	8.09	45.45
CDY18160	Canola	cytosol	22.98	39.89
CDY70182	Canola	extracellular	17.48	39.71
CDY46037	Canola	extracellular	17.48	39.71
CDY60955	Canola	cytosol, extracellular, plastid, vacuole	39.16	39.41
CDY15326	Canola	cytosol	15.86	38.28
CDY65287	Canola	cytosol	11.97	38.14
CDY72470	Canola	golgi, nucleus, plasma membrane	47.57	37.79
CDY29771	Canola	cytosol, plastid	39.81	36.94
CDY70684	Canola	cytosol	23.3	35.12
CDX70134	Canola	cytosol	42.72	33.5
CDY15327	Canola	cytosol	40.78	32.73
CDX98860	Canola	cytosol	42.39	32.43
CDY67625	Canola	mitochondrion	26.54	31.91
CDY15336	Canola	plastid	40.45	31.89
CDY52273	Canola	cytosol, plastid	30.42	31.54
CDY65288	Canola	mitochondrion	27.83	31.16
CDY30662	Canola	extracellular, mitochondrion	13.92	31.16
CDY42089	Canola	cytosol	41.1	31.13
CDY60961	Canola	cytosol	39.81	30.98
CDY15324	Canola	cytosol	38.19	30.81
CDY15332	Canola	cytosol	38.51	30.51
CDY19088	Canola	cytosol	39.81	30.37
CDY19134	Canola	mitochondrion	37.54	30.37
CDY66545	Canola	cytosol, peroxisome, plastid	35.92	30.25
CDY12627	Canola	cytosol	38.84	30.15
CDY15359	Canola	cytosol, plastid	38.84	30.15
CDY67066	Canola	cytosol, mitochondrion, nucleus, peroxisome	39.16	29.88
CDY05937	Canola	cytosol	32.36	29.59
CDY15344	Canola	mitochondrion	33.01	29.48
CDY12626	Canola	cytosol	35.6	29.41
CDY29772	Canola	cytosol	38.51	29.17
CDY67859	Canola	cytosol, mitochondrion	35.28	28.84
CDY19137	Canola	cytosol, mitochondrion, plastid	37.86	28.82
CDY15352	Canola	mitochondrion	37.54	28.71
CDY08136	Canola	cytosol	37.54	28.64
CDY71858	Canola	cytosol, mitochondrion, nucleus, plastid	11.65	28.57
CDX97551	Canola	mitochondrion	36.25	28.57
CDY08137	Canola	cytosol	37.54	28.43
CDY31173	Canola	cytosol, mitochondrion	36.57	28.39
CDY15333	Canola	mitochondrion	35.28	28.39
CDY72410	Canola	cytosol	33.98	28.3
CDY51358	Canola	cytosol	34.3	28.04
CDX83262	Canola	cytosol, mitochondrion	35.92	27.89
CDY15358	Canola	cytosol, extracellular, plastid	12.3	27.14
CDY19132	Canola	mitochondrion	34.3	26.97
CDY42088	Canola	cytosol	35.28	26.65
CDY29942	Canola	cytosol	25.24	26.26
CDY66546	Canola	cytosol	20.71	25.6
CDX97874	Canola	extracellular	22.01	25.37
CDX79453	Canola	plastid	31.07	25.26
CDY60959	Canola	cytosol, mitochondrion, plastid	21.68	24.19
CDY10678	Canola	cytosol	30.1	24.09
CDY08200	Canola	cytosol, golgi, mitochondrion, plasma membrane	34.3	23.98
CDY00206	Canola	nucleus	13.92	23.76
CDY52272	Canola	cytosol	1.62	22.73
CDY30661	Canola	cytosol	16.18	21.55
CDY19127	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	38.51	20.7
CDY12260	Canola	cytosol	21.04	20.38
CDY19131	Canola	mitochondrion	38.51	20.0
CDY15353	Canola	cytosol	31.72	19.03
CDY12259	Canola	cytosol	19.74	18.83
CDY26564	Canola	mitochondrion	21.68	14.63
CDY15999	Canola	cytosol, mitochondrion	25.57	12.27
CDY15342	Canola	cytosol	7.44	10.09

Protein Annotations

Gene3D:1.20.1280.50	MapMan:35.1	UniProt:A0A078HWJ0	EnsemblPlants:CDY42091	ProteinID:CDY42091	ProteinID:CDY42091.1
InterPro:F-box-assoc_dom_typ3	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00074133001	InterPro:IPR001810	PFAM:PF00646	PFAM:PF08268	PFscan:PS50181
PANTHER:PTHR31790	PANTHER:PTHR31790:SF47	SMART:SM00256	SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI0004EEB74D

Description

BnaA05g10950DBnaA05g10950D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HWJ0]

Coordinates

chrLK032514:+:171149..172306

Molecular Weight (calculated)

34794.1 Da

IEP (calculated)

9.599

GRAVY (calculated)

-0.119

Length

309 amino acids

Sequence
(BLAST)

001: MKSKRSKRAK TLLNGRANSK TIPTDLIIDI LSRLPMKSVA RFRCVSKLWA SIVDLPYLKE FFTTRASAHP QLLFVYKEKH KFVFLSSPQP QNLDENSTPE
101: AVLSITRYST LDQHQVLTLG TGELKWRTIK CSTPQDSFQQ GICINGVLYY PVCTRGIDMI GCFHVRSETF SFIEVETTSI GAVFEGTLIN YNGKLGSLIS
201: DAGDRFADGE SRSIKLLVIG NFEKQEWSKH EYVLPPMWKN VVGRADLRLV GFVGTSEVVF SHPSQVIYYN IETQGVVKVA IQGMGASSKC KFATFVNHME
301: DLKFTHAFK

Best Arabidopsis Sequence Match ( AT2G19630.1 )
(BLAST)

001: MKTSLRLEDG TKNSLQIPID LIIEIFLRLS VNSIARCRCV SKQWASTLSR PYFTELFLTR SLARPKLLFA YRKGSDYLFL SSPQLQNPDD DHKKSSPVVV
101: NYHMHHILTL GSGNMSWRTI QCCIPHRSFD GGICIDGLIY YYAGVNNNDI VIVCFDVRSE EFRFIIGALH HGSLINYNGK LSLYLPSTVY SRFNGVIRSI
201: KLWVLEDAKR QEWSEHTYIL PAMHDIMKTT DLRCVGMTQT KEFVFWSIKG MRFYVFYYNI ERNTIKKVEM QGMEAFKESN VYTFLDHVED VKLMQFF

Arabidopsis Description

Putative F-box protein At2g19630 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUN0]
SUBAcon: [cytosol,nucleus,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.