CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
EpiLoc:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra017982.1-P	Field mustard	cytosol	100.0	100.0
CDY67625	Canola	mitochondrion	58.58	93.0
CDY08136	Canola	cytosol	67.16	67.65
CDY05937	Canola	cytosol	53.68	64.79
CDY72410	Canola	cytosol	57.84	63.61
AT3G49450.1	Thale cress	cytosol	51.72	52.75
CDY65287	Canola	cytosol	10.05	42.27
CDY15357	Canola	cytosol, nucleus, plastid	5.64	41.82
CDY70684	Canola	cytosol	20.59	40.98
CDY31173	Canola	cytosol, mitochondrion	39.95	40.95
CDX83262	Canola	cytosol, mitochondrion	39.95	40.95
CDY00206	Canola	nucleus	18.14	40.88
CDY65288	Canola	mitochondrion	27.45	40.58
CDY12626	Canola	cytosol	37.01	40.37
CDY60955	Canola	cytosol, extracellular, plastid, vacuole	30.15	40.07
CDY70182	Canola	extracellular	13.24	39.71
CDY46037	Canola	extracellular	13.24	39.71
CDY66546	Canola	cytosol	24.26	39.6
CDY12239	Canola	mitochondrion	26.96	39.43
CDY67859	Canola	cytosol, mitochondrion	36.27	39.15
CDY15326	Canola	cytosol	12.25	39.06
CDY12627	Canola	cytosol	37.99	38.94
CDY60961	Canola	cytosol	37.5	38.54
CDY19088	Canola	cytosol	38.24	38.52
CDY67066	Canola	cytosol, mitochondrion, nucleus, peroxisome	38.24	38.52
CDY42089	Canola	cytosol	38.48	38.48
CDY15359	Canola	cytosol, plastid	37.01	37.94
CDY52273	Canola	cytosol, plastid	27.7	37.92
CDX79454	Canola	cytosol	27.94	37.87
CDX98860	Canola	cytosol	37.5	37.87
CDY15344	Canola	mitochondrion	32.11	37.86
CDY42091	Canola	mitochondrion	28.43	37.54
CDY15324	Canola	cytosol	35.05	37.34
CDY66545	Canola	cytosol, peroxisome, plastid	33.58	37.33
CDX70134	Canola	cytosol	35.78	37.06
CDY19137	Canola	cytosol, mitochondrion, plastid	36.76	36.95
CDY15332	Canola	cytosol	35.29	36.92
CDY15327	Canola	cytosol	34.8	36.88
CDY15336	Canola	plastid	35.29	36.73
CDY42088	Canola	cytosol	36.76	36.67
CDY19134	Canola	mitochondrion	34.07	36.39
CDY29771	Canola	cytosol, plastid	29.41	36.04
CDY72470	Canola	golgi, nucleus, plasma membrane	34.31	35.99
CDY15352	Canola	mitochondrion	35.54	35.89
CDY10678	Canola	cytosol	33.33	35.23
CDY15333	Canola	mitochondrion	33.09	35.16
CDY29772	Canola	cytosol	35.05	35.05
CDY29942	Canola	cytosol	25.49	35.02
CDX79453	Canola	plastid	32.6	35.0
CDY18160	Canola	cytosol	15.2	34.83
CDY19132	Canola	mitochondrion	33.09	34.35
CDY30661	Canola	cytosol	19.36	34.05
CDX97551	Canola	mitochondrion	32.35	33.67
CDY51358	Canola	cytosol	31.13	33.6
CDY42092	Canola	cytosol	11.52	33.33
CDY15358	Canola	cytosol, extracellular, plastid	11.27	32.86
CDY30662	Canola	extracellular, mitochondrion	11.03	32.61
CDX97874	Canola	extracellular	21.32	32.46
CDY08200	Canola	cytosol, golgi, mitochondrion, plasma membrane	35.05	32.35
CDY60959	Canola	cytosol, mitochondrion, plastid	21.81	32.13
CDY12259	Canola	cytosol	24.26	30.56
CDY12260	Canola	cytosol	23.77	30.41
CDY71858	Canola	cytosol, mitochondrion, nucleus, plastid	9.31	30.16
CDY52272	Canola	cytosol	1.47	27.27
CDY19127	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	32.84	23.3
CDY15353	Canola	cytosol	29.41	23.3
CDY19131	Canola	mitochondrion	33.82	23.19
CDY26564	Canola	mitochondrion	20.34	18.12
CDY15999	Canola	cytosol, mitochondrion	23.53	14.91
CDY15342	Canola	cytosol	7.84	14.04

Protein Annotations

EnsemblPlants:CDY08137	EnsemblPlantsGene:GSBRNA2T00125428001	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-assoc_dom_typ3	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR31790
PANTHER:PTHR31790:SF47	PFAM:PF00646	PFAM:PF08268	ProteinID:CDY08137	ProteinID:CDY08137.1	SMART:SM00256
SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI000253F1B4	UniProt:A0A078F4X0	MapMan:35.1	:

Description

BnaA06g15890DBnaA06g15890D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F4X0]

Coordinates

chrLK031983:-:626056..627282

Molecular Weight (calculated)

45907.9 Da

IEP (calculated)

8.784

GRAVY (calculated)

-0.069

Length

408 amino acids

Sequence
(BLAST)

001: MKKRKQSVSK EEVRIISSTT STKASGEKSC LPMDTILEVL SRLPAKSIAR CRVVSKDWGS TLCRPYFTDL FLKMSSLSPC LLFTFHAEGK WSFFSSPESM
101: LISDQKSSSV AVDSLSHVPI DYPIRVCVPA CGLLCTKDEW VLSRKKDARM MICNPSTGGF KLLPKVKTGR GRVMTYLGYD PIEEVYKVLC MTASERPYIQ
201: KAEQHQVLTL GTGKLNWRMI ECPISHYPRP RDNEICINGV LYYSAVEGGS WRTSTSSMIV CFDIRSEKLK FIVDEAIKDF KSPSTLINYK GKLGILTPHT
301: SGAIDGISIG FELWVIDDIE KPTLWRHAHI FPPLWDTLVA QTSVNIVGLT GDSEIVFSPT VVSNPFYIFC YNMETKSIRR VEIKGFGPVT GQNIYTFLNH
401: MENVKLIT

Best Arabidopsis Sequence Match ( AT3G49450.1 )
(BLAST)

001: MSAMMKKRKR KVSKENVALT ISSSVGEYGE NSGTLPTDLM VEILSRVPAK SAARFRCVSN DWNSLLRSPY LTNLFLKRSS ARPHLLITFQ AEGKWSFFSS
101: PEYLISDQNS NLVVVDNHMD VPKDYSFGVC VPVCGLMCTS NEWVLSRKRD ARMMICNPST GQFKSLPKVR SCRGNVITYI GYNPIEKQYK VLCMTIREKP
201: FKFKAEEHQV LTLGTGKLKW RMLECSVDHY PYYHGSICIN GVLFYLAMKS ESKEYMTVSF HMKDENFMFI PNQDLLSTLI NYKGRLGGIR HKSFGFMDGG
301: DVGFELWILD VVNQEWIRSI HVLPPMWKDV VGETRVYFVG IIGSCEVVFS PFVKSNPFYI FHLDMKSNSI TRVEIKGTGP LEGQAVYTFV NHIENVNLIM

Arabidopsis Description

F-box and associated interaction domains-containing protein [Source:TAIR;Acc:AT3G49450]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.