Factsheet for Bra017982.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
EpiLoc:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08137	Canola	cytosol	100.0	100.0
Bra017983.1-P	Field mustard	cytosol	71.08	71.6
AT3G49450.1	Thale cress	cytosol	51.72	52.75
Bra022876.1-P	Field mustard	cytosol	15.69	41.29
Bra019597.1-P	Field mustard	nucleus	18.14	40.88
Bra034016.1-P	Field mustard	cytosol	40.2	40.8
Bra021772.1-P	Field mustard	plastid	37.99	39.74
Bra034015.1-P	Field mustard	cytosol, nucleus, peroxisome	38.48	39.45
Bra021702.1-P	Field mustard	cytosol, peroxisome, plastid	38.48	39.35
Bra021767.1-P	Field mustard	cytosol	37.5	38.54
Bra021730.1-P	Field mustard	cytosol	38.24	38.52
Bra005628.1-P	Field mustard	cytosol	38.48	38.48
Bra005629.1-P	Field mustard	cytosol	35.54	38.06
Bra033850.1-P	Field mustard	cytosol	25.49	37.14
Bra022877.1-P	Field mustard	cytosol	35.54	36.99
Bra009129.1-P	Field mustard	cytosol	35.78	36.78
Bra021782.1-P	Field mustard	plastid	34.56	36.53
Bra021784.1-P	Field mustard	plastid	34.56	36.25
Bra021785.1-P	Field mustard	mitochondrion	33.58	35.86
Bra021783.1-P	Field mustard	mitochondrion	34.31	35.81
Bra021769.1-P	Field mustard	cytosol	35.29	35.56
Bra033908.1-P	Field mustard	cytosol	33.58	35.49
Bra036901.1-P	Field mustard	cytosol	36.52	35.48
Bra036902.1-P	Field mustard	cytosol	35.54	35.45
Bra039989.1-P	Field mustard	cytosol	33.58	33.99
Bra027364.1-P	Field mustard	mitochondrion	32.6	33.93
Bra021786.1-P	Field mustard	mitochondrion	28.68	31.71
Bra005631.1-P	Field mustard	cytosol	11.03	31.47
Bra023809.1-P	Field mustard	mitochondrion	25.25	31.4
Bra021789.1-P	Field mustard	cytosol	36.52	29.22
Bra000514.1-P	Field mustard	cytosol, nucleus, plasma membrane	38.24	26.99
Bra021780.1-P	Field mustard	mitochondrion	33.09	22.69
Bra023245.1-P	Field mustard	cytosol	23.04	19.46
Bra021777.1-P	Field mustard	cytosol	32.84	14.64

Protein Annotations

Gene3D:1.20.1280.50	MapMan:35.1	EnsemblPlantsGene:Bra017982	EnsemblPlants:Bra017982.1	EnsemblPlants:Bra017982.1-P	InterPro:F-box-assoc_dom_typ3
InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001810	UniProt:M4DN95	PFAM:PF00646	PFAM:PF08268	PANTHER:PTHR31790	PANTHER:PTHR31790:SF47
SMART:SM00256	SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI000253F1B4	:	:

Description

AT3G49450 (E=1e-123) | F-box family protein

Coordinates

chrA06:+:9250545..9251771

Molecular Weight (calculated)

45907.9 Da

IEP (calculated)

8.784

GRAVY (calculated)

-0.069

Length

408 amino acids

Sequence
(BLAST)

001: MKKRKQSVSK EEVRIISSTT STKASGEKSC LPMDTILEVL SRLPAKSIAR CRVVSKDWGS TLCRPYFTDL FLKMSSLSPC LLFTFHAEGK WSFFSSPESM
101: LISDQKSSSV AVDSLSHVPI DYPIRVCVPA CGLLCTKDEW VLSRKKDARM MICNPSTGGF KLLPKVKTGR GRVMTYLGYD PIEEVYKVLC MTASERPYIQ
201: KAEQHQVLTL GTGKLNWRMI ECPISHYPRP RDNEICINGV LYYSAVEGGS WRTSTSSMIV CFDIRSEKLK FIVDEAIKDF KSPSTLINYK GKLGILTPHT
301: SGAIDGISIG FELWVIDDIE KPTLWRHAHI FPPLWDTLVA QTSVNIVGLT GDSEIVFSPT VVSNPFYIFC YNMETKSIRR VEIKGFGPVT GQNIYTFLNH
401: MENVKLIT

Best Arabidopsis Sequence Match ( AT3G49450.1 )
(BLAST)

001: MSAMMKKRKR KVSKENVALT ISSSVGEYGE NSGTLPTDLM VEILSRVPAK SAARFRCVSN DWNSLLRSPY LTNLFLKRSS ARPHLLITFQ AEGKWSFFSS
101: PEYLISDQNS NLVVVDNHMD VPKDYSFGVC VPVCGLMCTS NEWVLSRKRD ARMMICNPST GQFKSLPKVR SCRGNVITYI GYNPIEKQYK VLCMTIREKP
201: FKFKAEEHQV LTLGTGKLKW RMLECSVDHY PYYHGSICIN GVLFYLAMKS ESKEYMTVSF HMKDENFMFI PNQDLLSTLI NYKGRLGGIR HKSFGFMDGG
301: DVGFELWILD VVNQEWIRSI HVLPPMWKDV VGETRVYFVG IIGSCEVVFS PFVKSNPFYI FHLDMKSNSI TRVEIKGTGP LEGQAVYTFV NHIENVNLIM

Arabidopsis Description

F-box and associated interaction domains-containing protein [Source:TAIR;Acc:AT3G49450]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.