Factsheet for Bra021782.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
nucleus 2
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra021784.1-P	Field mustard	plastid	98.19	97.43
Bra021785.1-P	Field mustard	mitochondrion	76.17	76.96
Bra021783.1-P	Field mustard	mitochondrion	77.2	76.21
Bra021767.1-P	Field mustard	cytosol	66.58	64.74
Bra021772.1-P	Field mustard	plastid	58.81	58.21
Bra021769.1-P	Field mustard	cytosol	60.88	58.02
Bra027364.1-P	Field mustard	mitochondrion	58.29	57.4
Bra023809.1-P	Field mustard	mitochondrion	47.41	55.79
Bra039989.1-P	Field mustard	cytosol	57.51	55.09
Bra021786.1-P	Field mustard	mitochondrion	50.52	52.85
Bra021789.1-P	Field mustard	cytosol	59.33	44.9
AT3G23960.1	Thale cress	cytosol	46.11	44.28
Bra034015.1-P	Field mustard	cytosol, nucleus, peroxisome	43.01	41.71
Bra005628.1-P	Field mustard	cytosol	44.04	41.67
Bra034016.1-P	Field mustard	cytosol	42.75	41.04
Bra021730.1-P	Field mustard	cytosol	42.49	40.49
Bra022877.1-P	Field mustard	cytosol	40.41	39.8
Bra021780.1-P	Field mustard	mitochondrion	60.62	39.33
Bra005629.1-P	Field mustard	cytosol	37.82	38.32
Bra009129.1-P	Field mustard	cytosol	39.38	38.29
Bra021702.1-P	Field mustard	cytosol, peroxisome, plastid	39.38	38.1
Bra005631.1-P	Field mustard	cytosol	13.99	37.76
Bra022876.1-P	Field mustard	cytosol	15.03	37.42
Bra036902.1-P	Field mustard	cytosol	38.6	36.43
Bra036901.1-P	Field mustard	cytosol	39.38	36.19
Bra017982.1-P	Field mustard	cytosol	36.53	34.56
Bra019597.1-P	Field mustard	nucleus	16.06	34.25
Bra033908.1-P	Field mustard	cytosol	33.42	33.42
Bra033850.1-P	Field mustard	cytosol	24.09	33.21
Bra017983.1-P	Field mustard	cytosol	33.68	32.1
Bra000514.1-P	Field mustard	cytosol, nucleus, plasma membrane	34.46	23.01
Bra023245.1-P	Field mustard	cytosol	26.68	21.33
Bra021777.1-P	Field mustard	cytosol	43.78	18.47

Protein Annotations

Gene3D:1.20.1280.50	MapMan:35.1	EnsemblPlantsGene:Bra021782	EnsemblPlants:Bra021782.1	EnsemblPlants:Bra021782.1-P	InterPro:F-box-assoc_dom_typ3
InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001810	UniProt:M4DZ35	PFAM:PF00646	PFAM:PF08268	PFscan:PS50181	PANTHER:PTHR31790
PANTHER:PTHR31790:SF10	SMART:SM00256	SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI0002544F1B	SEG:seg

Description

AT2G31470 (E=1e-088) | F-box family protein

Coordinates

chrA04:-:14436513..14437673

Molecular Weight (calculated)

44288.7 Da

IEP (calculated)

9.486

GRAVY (calculated)

-0.134

Length

386 amino acids

Sequence
(BLAST)

001: MKGGLSISRR VTRSTTTLDR NSLTLPVEVV TEILSRLPSK SIARCHCVCK LWSSVIRSQD FTELFLTKSC ARRPQLLFAC EGRSEIHFFS SPQPENLEDN
101: SYVVATNHIA RSPRYYKLFG CTNGFFCYGA NQGKNKAGIV TVICNPSTGQ SLTLPRLKTR IRVEAESYLG YDPIAKQFKV LSVCDDGKEF HVLTLGTKKL
201: SWRLVECCIR HYSSGKWICI SGVLYYIAKE IRYSVESMVV CFDLRTEKFS FVNLLRRFNR SHSTTLTNYN GRLGFLMSSE DYYVTRSCKR FELWVLRDVA
301: KHEWSRHVYV LPPVWKGVVE DRLDIAGMVG VDEIVLTPCF QRVSSCVIYY NVKSKTIREV GIQGMEAFQG KRLNTYLNYV ENVKFL

Best Arabidopsis Sequence Match ( AT5G65850.1 )
(BLAST)

001: MRTLRRNVTE NRLTISRRRT EKKTSPNKTE KSVQIPVDII IEILLRLPAK SIATCRCVSK LWISVICRQD FTELFLTRSL HRPQLLFCCK KDGNLFFFSS
101: PQLQNPYENS SAISLKNFSL CYKISRPVNG LICFKRKEMN ETVTVICNPS TGHTLSLPKP MKTSIGPSRF FVYEPIQKQF KVLLSYKSDE HQVLTLGTGE
201: LSWRIIECSM PHILGMSEIC INGVLYYPAI NLSSGDYIIV CFDVRSEKFR FITVMEEFIK AAHDGTLINY NGKLASLVSE RYCFVDGRSK SIELWVLQDA
301: EKKEWSKHTY VLPAWWQHRI GTLNLRFVGV TRTNEIMLSP CYQTVPFDVY YFNIERKTMM SVAIQGMEAF QGHLVFTYLD HVENVKLLHN MF

Arabidopsis Description

F-box protein At5g65850 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHP3]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.