Factsheet for Bra021730.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 4
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000874.1-P
Bra036257.1-P
Bra039504.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G31470.1	Bra039504.1-P	AT2G03170.1	18835996
AT2G31470.1	Bra000874.1-P	AT4G02570.1	18835996
AT2G31470.1	Bra036257.1-P	AT4G02570.1	18835996

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY19088	Canola	cytosol	99.75	99.75
AT2G31470.1	Thale cress	cytosol	50.12	52.45
Bra021702.1-P	Field mustard	cytosol, peroxisome, plastid	47.16	47.87
Bra009129.1-P	Field mustard	cytosol	46.91	47.86
Bra021772.1-P	Field mustard	plastid	43.21	44.87
Bra034016.1-P	Field mustard	cytosol	42.96	43.28
Bra021785.1-P	Field mustard	mitochondrion	40.49	42.93
Bra005628.1-P	Field mustard	cytosol	43.21	42.89
Bra034015.1-P	Field mustard	cytosol, nucleus, peroxisome	41.98	42.71
Bra021784.1-P	Field mustard	plastid	40.99	42.67
Bra021782.1-P	Field mustard	plastid	40.49	42.49
Bra027364.1-P	Field mustard	mitochondrion	40.74	42.09
Bra021783.1-P	Field mustard	mitochondrion	40.49	41.94
Bra023809.1-P	Field mustard	mitochondrion	33.58	41.46
Bra036901.1-P	Field mustard	cytosol	42.96	41.43
Bra021769.1-P	Field mustard	cytosol	40.99	40.99
Bra039989.1-P	Field mustard	cytosol	40.49	40.69
Bra022876.1-P	Field mustard	cytosol	15.56	40.65
Bra021767.1-P	Field mustard	cytosol	39.75	40.55
Bra033850.1-P	Field mustard	cytosol	27.65	40.0
Bra005629.1-P	Field mustard	cytosol	37.04	39.37
Bra022877.1-P	Field mustard	cytosol	37.53	38.78
Bra036902.1-P	Field mustard	cytosol	39.01	38.63
Bra017982.1-P	Field mustard	cytosol	38.52	38.24
Bra033908.1-P	Field mustard	cytosol	36.3	38.08
Bra019597.1-P	Field mustard	nucleus	16.3	36.46
Bra005631.1-P	Field mustard	cytosol	12.84	36.36
Bra021786.1-P	Field mustard	mitochondrion	33.09	36.31
Bra017983.1-P	Field mustard	cytosol	35.31	35.31
Bra021789.1-P	Field mustard	cytosol	43.21	34.31
Bra021780.1-P	Field mustard	mitochondrion	39.26	26.72
Bra000514.1-P	Field mustard	cytosol, nucleus, plasma membrane	36.54	25.61
Bra023245.1-P	Field mustard	cytosol	23.7	19.88
Bra021777.1-P	Field mustard	cytosol	42.96	19.02

Protein Annotations

EnsemblPlants:Bra021730.1	EnsemblPlants:Bra021730.1-P	EnsemblPlantsGene:Bra021730	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-assoc_dom_typ3	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR31790
PANTHER:PTHR31790:SF10	PFAM:PF00646	PFAM:PF08268	SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI0002544B8D
UniProt:M4DYY3	MapMan:35.1	:	:	:	:

Description

AT2G31470 (E=4e-102) | F-box family protein

Coordinates

chrA04:+:14144020..14145237

Molecular Weight (calculated)

46649.3 Da

IEP (calculated)

9.338

GRAVY (calculated)

-0.251

Length

405 amino acids

Sequence
(BLAST)

001: MKSPRYNDVS ENPQTILRCH SRYSSPISID LIIEILLRLP LNSIARCRCV SKLLASILVR LDFTDSFLAS SLSRPQVLFA CQKQFTNDVM FYFSTPQPQN
101: PDENSSTIVA NYHMSFPFDS PSRCSAVSGF VCTDDFRVIK GQKTPRRVWV ICNPSTGQSF TLPKMKTRKR IWIRCFLGYD PIEKQHKALA MTSQVTKAED
201: HQVLTLGGTD KLAWRRIECG IPQYGYPGPR NICINGVLYF KAKAKNSSNG DDIIVCFDVR SEKYNFVKVM ERLVHPRATL VNYNGKLASV ISQSHYHFIY
301: DTTRSFEMWV LQDSEKHEWS KHIYILPPLW KHISAGQNLY FVGVTGADEI VLCPKSLFRE PFYVYYYNLK RGTIRRVEIQ GLEKLEGSYT VDTFLNHVED
401: VKILK

Best Arabidopsis Sequence Match ( AT2G31470.1 )
(BLAST)

001: MKSRRQNVSV ARQTILGRDE NFEPIPIDLV IEIFSRSPVK SIARCRCVSK LWASILRLPY FTELYLTKSC ARPRLLFACQ KHRELFFFST PQPHNPNESS
101: SPLAASFHMK IPFDGRFNII SPIGGLVFVR YEQILKGRKT PEFVSAICNP STGQSLTLPK PKTRKRIWGT SHFGYDPIEK QFKVLSMNIG DGVYKEHYVL
201: TLGTENLSWR RIECSIPHVH GSKGICINGV LYYRAKADMF SGTLMIVCFD VRFEKFSYIK ILKPTTTLIS YNGKLASLVW EGPSYICGKR FEMWVLGDPE
301: KHEWLKHTYE LRPRWQNVLG EDLLIFAGMT GTNEIVLSPK YPSHPFYVFY YNLERNTIRR VEIQGMGAFK VNEDYIFLDH VEDVKLI

Arabidopsis Description

DORF-box protein DOR [Source:UniProtKB/Swiss-Prot;Acc:Q5BPS3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.