Factsheet for Bra017983.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
mitochondrion 2
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
EpiLoc:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08136	Canola	cytosol	83.7	83.7
Bra017982.1-P	Field mustard	cytosol	71.6	71.08
AT3G49450.1	Thale cress	cytosol	48.89	49.5
Bra019597.1-P	Field mustard	nucleus	18.27	40.88
Bra034016.1-P	Field mustard	cytosol	40.49	40.8
Bra022876.1-P	Field mustard	cytosol	15.56	40.65
Bra005629.1-P	Field mustard	cytosol	35.06	37.27
Bra021702.1-P	Field mustard	cytosol, peroxisome, plastid	36.54	37.09
Bra005628.1-P	Field mustard	cytosol	37.28	37.01
Bra034015.1-P	Field mustard	cytosol, nucleus, peroxisome	36.3	36.93
Bra021767.1-P	Field mustard	cytosol	36.05	36.78
Bra033850.1-P	Field mustard	cytosol	25.19	36.43
Bra021772.1-P	Field mustard	plastid	35.06	36.41
Bra009129.1-P	Field mustard	cytosol	35.56	36.27
Bra022877.1-P	Field mustard	cytosol	34.32	35.46
Bra021730.1-P	Field mustard	cytosol	35.31	35.31
Bra033908.1-P	Field mustard	cytosol	33.33	34.97
Bra036902.1-P	Field mustard	cytosol	35.31	34.96
Bra021785.1-P	Field mustard	mitochondrion	32.35	34.29
Bra021783.1-P	Field mustard	mitochondrion	32.84	34.02
Bra036901.1-P	Field mustard	cytosol	35.06	33.81
Bra021782.1-P	Field mustard	plastid	32.1	33.68
Bra021784.1-P	Field mustard	plastid	32.1	33.42
Bra027364.1-P	Field mustard	mitochondrion	31.36	32.4
Bra021769.1-P	Field mustard	cytosol	32.35	32.35
Bra039989.1-P	Field mustard	cytosol	31.6	31.76
Bra005631.1-P	Field mustard	cytosol	11.11	31.47
Bra023809.1-P	Field mustard	mitochondrion	24.2	29.88
Bra021786.1-P	Field mustard	mitochondrion	26.42	29.0
Bra021789.1-P	Field mustard	cytosol	34.07	27.06
Bra000514.1-P	Field mustard	cytosol, nucleus, plasma membrane	37.04	25.95
Bra021780.1-P	Field mustard	mitochondrion	31.85	21.68
Bra023245.1-P	Field mustard	cytosol	20.49	17.18
Bra021777.1-P	Field mustard	cytosol	32.1	14.21

Protein Annotations

EnsemblPlants:Bra017983.1	EnsemblPlants:Bra017983.1-P	EnsemblPlantsGene:Bra017983	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-assoc_dom_typ3	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR31790
PANTHER:PTHR31790:SF47	PFAM:PF00646	PFAM:PF08268	PFscan:PS50181	SMART:SM00256	SUPFAM:SSF81383
TIGRFAMs:TIGR01640	UniParc:UPI000253F1B5	UniProt:M4DN96	MapMan:35.1	:	:

Description

AT3G49450 (E=2e-119) | F-box family protein

Coordinates

chrA06:+:9259848..9261065

Molecular Weight (calculated)

46040.7 Da

IEP (calculated)

9.429

GRAVY (calculated)

-0.034

Length

405 amino acids

Sequence
(BLAST)

001: MKKRKQCVSK EETRIISSIT STKASGENYG QIPMDIILKI LSRVPAKSIA RFRCVSKDWG VTLCRPYFTD LFLKMSSLSP CLLFTFHAEG KWSFFSLPES
101: MLISDQKSSR VVDSLSHVPI DYPIRVCVPV GGLLCTKDEW NLSGKKDARM MICNPSTGGF KLLPKVKTRR RRVLTYLGYD PVEIVYKVLC MTSCERPYSP
201: KTEQHQVLTL GTGKMNWRMI ECSVSHYPQS HHNETCIDGV LYYLAVGSGC WKTSMIVCFD IRSEKLKFIV DEAFKDIKSP STLINYKGKL GIIHHNAPGL
301: MDGKSSGFAL WVIDDMEKHI WCKNIVMFPS LWWNLVAGTR VRIIGTTGNG EILFSPCVVS IPFYIFCYNM ETNAIRRVEI KGFGPVMGQK IYTFLNHMEN
401: LKLVP

Best Arabidopsis Sequence Match ( AT3G49450.1 )
(BLAST)

001: MSAMMKKRKR KVSKENVALT ISSSVGEYGE NSGTLPTDLM VEILSRVPAK SAARFRCVSN DWNSLLRSPY LTNLFLKRSS ARPHLLITFQ AEGKWSFFSS
101: PEYLISDQNS NLVVVDNHMD VPKDYSFGVC VPVCGLMCTS NEWVLSRKRD ARMMICNPST GQFKSLPKVR SCRGNVITYI GYNPIEKQYK VLCMTIREKP
201: FKFKAEEHQV LTLGTGKLKW RMLECSVDHY PYYHGSICIN GVLFYLAMKS ESKEYMTVSF HMKDENFMFI PNQDLLSTLI NYKGRLGGIR HKSFGFMDGG
301: DVGFELWILD VVNQEWIRSI HVLPPMWKDV VGETRVYFVG IIGSCEVVFS PFVKSNPFYI FHLDMKSNSI TRVEIKGTGP LEGQAVYTFV NHIENVNLIM

Arabidopsis Description

F-box and associated interaction domains-containing protein [Source:TAIR;Acc:AT3G49450]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.