Factsheet for Bra027364.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX97551	Canola	mitochondrion	97.7	97.7
Bra023809.1-P	Field mustard	mitochondrion	63.27	75.61
Bra021785.1-P	Field mustard	mitochondrion	60.2	61.78
Bra021769.1-P	Field mustard	cytosol	62.76	60.74
Bra021783.1-P	Field mustard	mitochondrion	59.44	59.59
Bra021767.1-P	Field mustard	cytosol	59.44	58.69
Bra021782.1-P	Field mustard	plastid	57.4	58.29
Bra021784.1-P	Field mustard	plastid	57.65	58.1
Bra021772.1-P	Field mustard	plastid	57.65	57.95
Bra039989.1-P	Field mustard	cytosol	57.65	56.08
Bra021786.1-P	Field mustard	mitochondrion	49.74	52.85
Bra021789.1-P	Field mustard	cytosol	61.73	47.45
AT3G23960.1	Thale cress	cytosol	45.66	44.53
Bra021780.1-P	Field mustard	mitochondrion	62.5	41.18
Bra034016.1-P	Field mustard	cytosol	41.84	40.8
Bra021730.1-P	Field mustard	cytosol	42.09	40.74
Bra005628.1-P	Field mustard	cytosol	41.33	39.71
Bra005629.1-P	Field mustard	cytosol	38.52	39.63
Bra034015.1-P	Field mustard	cytosol, nucleus, peroxisome	39.8	39.2
Bra022877.1-P	Field mustard	cytosol	38.78	38.78
Bra005631.1-P	Field mustard	cytosol	14.03	38.46
Bra021702.1-P	Field mustard	cytosol, peroxisome, plastid	38.01	37.34
Bra033850.1-P	Field mustard	cytosol	26.53	37.14
Bra009129.1-P	Field mustard	cytosol	37.5	37.03
Bra036901.1-P	Field mustard	cytosol	39.03	36.43
Bra036902.1-P	Field mustard	cytosol	35.97	34.47
Bra019597.1-P	Field mustard	nucleus	15.56	33.7
Bra022876.1-P	Field mustard	cytosol	13.27	33.55
Bra033908.1-P	Field mustard	cytosol	32.4	32.9
Bra017982.1-P	Field mustard	cytosol	33.93	32.6
Bra017983.1-P	Field mustard	cytosol	32.4	31.36
Bra000514.1-P	Field mustard	cytosol, nucleus, plasma membrane	33.93	23.01
Bra023245.1-P	Field mustard	cytosol	22.7	18.43
Bra021777.1-P	Field mustard	cytosol	40.82	17.49

Protein Annotations

EnsemblPlants:Bra027364.1	EnsemblPlants:Bra027364.1-P	EnsemblPlantsGene:Bra027364	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-assoc_dom_typ3	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810
PANTHER:PTHR31790	PANTHER:PTHR31790:SF47	PFAM:PF08268	PFAM:PF12937	SEG:seg	SMART:SM00256
SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI0002547DDB	UniProt:M4EF02	MapMan:35.1	:

Description

AT2G31470 (E=9e-076) | F-box family protein

Coordinates

chrA05:+:20549087..20550403

Molecular Weight (calculated)

44487.6 Da

IEP (calculated)

9.804

GRAVY (calculated)

-0.189

Length

392 amino acids

Sequence
(BLAST)

001: MTLQRAATRS MTSLHRNSLP IPDELAVEIF SRLPSKDIAR CRCACKLWSS MLLREDFTDL FLTKSSARPQ LLFACQDHNR NYIFFLSSPH PEKEENSSYV
101: VVAANHNLAR FPSSSYKLFG CTNGFCYGAR PRSRKPVICN PSTGQYLTLP RLKSRKWFEV VERRGQDSPL VNNYLGYDPV FKEFKVLSME RSKISAKHQV
201: LTLGTKKLSW RLVQCTTAHY SSNKWISISG VIYYAASANR SSANSMVACF DLRVEKFSFV NFGRTMHDST TLVNYNGKLG LLMSGDAPGE NISTTSKSFQ
301: LWVLQDAEWS KHVYILPPSW KDVVTKTMCF AGIIVGTNEI VLAPSLQNVP SYVIYFNVER NTITKVGIQG MEAFQGKRFN TYLNYVENVI LL

Best Arabidopsis Sequence Match ( AT1G53790.1 )
(BLAST)

001: MVRDIVDDPL DEDDIALVKT YGLVPYSAPI KKVEKEIKEL TEKINDLCGI KESDTGLAPL SKQMMQEGQP LQVGYVSCFR YIPIDLLMDI FSRVPAKSIA
101: RFRCVSKLWE SILCRPDFKE LFMTMSSIRP PLLLFTFQDD DGNLFFFSSP HPQIPCNENT SLVPTRYHVQ HTTDSFSEIG SPLCGFICRR GKRNLDTMVI
201: CNPVTGESVS LPKVELKSIN TETRPYLGYD PVRKQLKVLC IKSDDIPNTC DEHQVLTLEN GNHLWRTIQC KPHYPKSDGI CIDGILYYTA GFDMRARVSM
301: VVCFDVRSEK FSFINIHVFM LMNDSCTLIN YKGKLGALQF TCLSPKRLRF WVLVNAEKNI WTKCIYALPP LWNNLVQHTE LAIVGMTDGG EVVLSQYCLI
401: YAFYIYYFNL ESKSLTRVQI QDVEMFKRTR VYTSLGYVEN FKLM

Arabidopsis Description

F-box and associated interaction domains-containing protein [Source:UniProtKB/TrEMBL;Acc:B3H7F2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.