Factsheet for Bra021702.1-P

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

plastid 2
nucleus 2
cytosol 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000874.1-P
Bra036257.1-P
Bra039504.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G31470.1	Bra039504.1-P	AT2G03170.1	18835996
AT2G31470.1	Bra000874.1-P	AT4G02570.1	18835996
AT2G31470.1	Bra036257.1-P	AT4G02570.1	18835996

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY65287	Canola	cytosol	24.06	98.97
CDY66546	Canola	cytosol	53.13	84.8
CDY66545	Canola	cytosol, peroxisome, plastid	71.68	77.93
CDY65288	Canola	mitochondrion	53.88	77.9
AT2G31470.1	Thale cress	cytosol	48.87	50.39
Bra021730.1-P	Field mustard	cytosol	47.87	47.16
Bra009129.1-P	Field mustard	cytosol	45.86	46.1
Bra005628.1-P	Field mustard	cytosol	43.61	42.65
Bra021767.1-P	Field mustard	cytosol	42.36	42.57
Bra022876.1-P	Field mustard	cytosol	16.29	41.94
Bra021772.1-P	Field mustard	plastid	40.85	41.79
Bra034016.1-P	Field mustard	cytosol	41.6	41.29
Bra036901.1-P	Field mustard	cytosol	42.36	40.24
Bra021784.1-P	Field mustard	plastid	38.85	39.85
Bra021769.1-P	Field mustard	cytosol	40.35	39.75
Bra034015.1-P	Field mustard	cytosol, nucleus, peroxisome	39.6	39.7
Bra021782.1-P	Field mustard	plastid	38.1	39.38
Bra005629.1-P	Field mustard	cytosol	37.59	39.37
Bra021785.1-P	Field mustard	mitochondrion	37.59	39.27
Bra019597.1-P	Field mustard	nucleus	17.79	39.23
Bra021783.1-P	Field mustard	mitochondrion	38.35	39.13
Bra017982.1-P	Field mustard	cytosol	39.35	38.48
Bra027364.1-P	Field mustard	mitochondrion	37.34	38.01
Bra033850.1-P	Field mustard	cytosol	26.32	37.5
Bra021786.1-P	Field mustard	mitochondrion	34.09	36.86
Bra036902.1-P	Field mustard	cytosol	37.59	36.67
Bra017983.1-P	Field mustard	cytosol	37.09	36.54
Bra033908.1-P	Field mustard	cytosol	35.34	36.53
Bra022877.1-P	Field mustard	cytosol	35.84	36.48
Bra039989.1-P	Field mustard	cytosol	36.59	36.23
Bra023809.1-P	Field mustard	mitochondrion	28.82	35.06
Bra021789.1-P	Field mustard	cytosol	41.85	32.75
Bra005631.1-P	Field mustard	cytosol	11.28	31.47
Bra021780.1-P	Field mustard	mitochondrion	39.6	26.55
Bra000514.1-P	Field mustard	cytosol, nucleus, plasma membrane	37.59	25.95
Bra023245.1-P	Field mustard	cytosol	24.06	19.88
Bra021777.1-P	Field mustard	cytosol	39.6	17.27
CDY15342	Canola	cytosol	6.27	10.96

Protein Annotations

EnsemblPlants:Bra021702.1	EnsemblPlants:Bra021702.1-P	EnsemblPlantsGene:Bra021702	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-assoc_dom_typ3	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810
PANTHER:PTHR31790	PANTHER:PTHR31790:SF10	PFAM:PF00646	PFAM:PF08268	SMART:SM00256	SUPFAM:SSF81383
TIGRFAMs:TIGR01640	UniParc:UPI00025449B7	UniProt:M4DYV6	MapMan:35.1	:	:

Description

AT2G31470 (E=2e-100) | F-box family protein

Coordinates

chrA04:+:13974473..13975672

Molecular Weight (calculated)

45107.7 Da

IEP (calculated)

9.290

GRAVY (calculated)

-0.132

Length

399 amino acids

Sequence
(BLAST)

001: MKSRRRNVSE GHNTILQCHS RTCTEEYSET IPHDLIIEIV SRLPTKSVAR CRCVSKLWSS LLVHPYFTET YLTRSSASPK ILFACVKDGK VSFYTSPQPD
101: DDKASSPITA AAATYHMNFP FDHVIDIYRP MSGLVCIRDG RILKGRKTAA MVWEICNPST GQSVILPKMK SRKRTGAKSF FGYDPIEKQF KVLSMFTDND
201: FSSEHQVLTL STTGKLSVRI VECGIPHCPL SDGICISGVL YYKSSTEKRV RGIMCFDVRS ETFRFVKVME PFIGAVHPQT TLVNYKGKLA SVMSGWSYNF
301: IGETCTSFVM YVVQDLEKQE WSKHNYKFAP GLIDGFFAGV TVAGELVLSP KFPSSPFYVF YCSLERKSIR RVEIQGMGGF KQVYTFVNHV EDVKLMRTV

Best Arabidopsis Sequence Match ( AT2G31470.1 )
(BLAST)

001: MKSRRQNVSV ARQTILGRDE NFEPIPIDLV IEIFSRSPVK SIARCRCVSK LWASILRLPY FTELYLTKSC ARPRLLFACQ KHRELFFFST PQPHNPNESS
101: SPLAASFHMK IPFDGRFNII SPIGGLVFVR YEQILKGRKT PEFVSAICNP STGQSLTLPK PKTRKRIWGT SHFGYDPIEK QFKVLSMNIG DGVYKEHYVL
201: TLGTENLSWR RIECSIPHVH GSKGICINGV LYYRAKADMF SGTLMIVCFD VRFEKFSYIK ILKPTTTLIS YNGKLASLVW EGPSYICGKR FEMWVLGDPE
301: KHEWLKHTYE LRPRWQNVLG EDLLIFAGMT GTNEIVLSPK YPSHPFYVFY YNLERNTIRR VEIQGMGAFK VNEDYIFLDH VEDVKLI

Arabidopsis Description

DORF-box protein DOR [Source:UniProtKB/Swiss-Prot;Acc:Q5BPS3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.