Factsheet for Bra021785.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
plasma membrane 1
nucleus 1
mitochondrion 4
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY19134	Canola	mitochondrion	96.86	96.86
Bra021783.1-P	Field mustard	mitochondrion	96.6	94.37
Bra021782.1-P	Field mustard	plastid	76.96	76.17
Bra021784.1-P	Field mustard	plastid	75.39	74.04
Bra021767.1-P	Field mustard	cytosol	67.02	64.48
Bra027364.1-P	Field mustard	mitochondrion	61.78	60.2
Bra021769.1-P	Field mustard	cytosol	62.83	59.26
Bra021772.1-P	Field mustard	plastid	59.42	58.21
Bra023809.1-P	Field mustard	mitochondrion	48.95	57.01
Bra039989.1-P	Field mustard	cytosol	59.95	56.82
Bra021786.1-P	Field mustard	mitochondrion	52.62	54.47
Bra021789.1-P	Field mustard	cytosol	61.78	46.27
AT3G23960.1	Thale cress	cytosol	46.86	44.53
Bra005628.1-P	Field mustard	cytosol	43.98	41.18
Bra021780.1-P	Field mustard	mitochondrion	63.61	40.84
Bra021730.1-P	Field mustard	cytosol	42.93	40.49
Bra034016.1-P	Field mustard	cytosol	42.41	40.3
Bra034015.1-P	Field mustard	cytosol, nucleus, peroxisome	41.1	39.45
Bra022876.1-P	Field mustard	cytosol	15.97	39.35
Bra005629.1-P	Field mustard	cytosol	38.74	38.85
Bra022877.1-P	Field mustard	cytosol	39.53	38.52
Bra009129.1-P	Field mustard	cytosol	39.27	37.78
Bra021702.1-P	Field mustard	cytosol, peroxisome, plastid	39.27	37.59
Bra036902.1-P	Field mustard	cytosol	39.53	36.92
Bra036901.1-P	Field mustard	cytosol	40.58	36.9
Bra005631.1-P	Field mustard	cytosol	13.61	36.36
Bra033850.1-P	Field mustard	cytosol	25.13	34.29
Bra019597.1-P	Field mustard	nucleus	15.97	33.7
Bra017982.1-P	Field mustard	cytosol	35.86	33.58
Bra033908.1-P	Field mustard	cytosol	33.25	32.9
Bra017983.1-P	Field mustard	cytosol	34.29	32.35
Bra000514.1-P	Field mustard	cytosol, nucleus, plasma membrane	34.03	22.49
Bra023245.1-P	Field mustard	cytosol	24.08	19.05
Bra021777.1-P	Field mustard	cytosol	43.46	18.14

Protein Annotations

Gene3D:1.20.1280.50	MapMan:35.1	EnsemblPlantsGene:Bra021785	EnsemblPlants:Bra021785.1	EnsemblPlants:Bra021785.1-P	InterPro:F-box-assoc_dom_typ3
InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001810	UniProt:M4DZ38	PFAM:PF00646	PFAM:PF08268	PFscan:PS50181	PANTHER:PTHR31790
PANTHER:PTHR31790:SF10	SMART:SM00256	SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI0002544F1E	SEG:seg

Description

AT3G23960 (E=9e-086) | F-box family protein

Coordinates

chrA04:-:14448115..14449263

Molecular Weight (calculated)

43580.8 Da

IEP (calculated)

9.406

GRAVY (calculated)

-0.077

Length

382 amino acids

Sequence
(BLAST)

001: MSRRVTRSTT RLDRNSLTLP VEVVIDIFLR LPLKSIATCR CVCKLWSSVL RSQDFTDSFL TKSCARPQLL FACSDYRHEI HFLSSPQPEN PEDNSHVVAS
101: NHLARFPTSY GLFGCTNGFF CYGANQGKNK AVIVTVVCNP STGQSLTLPR LNSKERYRVE NYLGYDPVAK VFKVLSVFDG TEHHVLTLGT KKLSWRVVEC
201: CIPHSSSSKW ISISGVLYYI AAEPRSSSRE SMVVCFDLGT EKFSFVNLSR LKRALPQSTT LVNYNDRLGL LMSSEDTCYV FRTCKRFKLW VLRDAAKHEW
301: SKHVYVLPPL WKDVIVDRMC IAGMVGVNEI VLAPWFQYVP SYVIYYNVES KTIRKVGIQG MEALQGRRLN TYLNYVENVK LL

Best Arabidopsis Sequence Match ( AT1G53790.1 )
(BLAST)

001: MVRDIVDDPL DEDDIALVKT YGLVPYSAPI KKVEKEIKEL TEKINDLCGI KESDTGLAPL SKQMMQEGQP LQVGYVSCFR YIPIDLLMDI FSRVPAKSIA
101: RFRCVSKLWE SILCRPDFKE LFMTMSSIRP PLLLFTFQDD DGNLFFFSSP HPQIPCNENT SLVPTRYHVQ HTTDSFSEIG SPLCGFICRR GKRNLDTMVI
201: CNPVTGESVS LPKVELKSIN TETRPYLGYD PVRKQLKVLC IKSDDIPNTC DEHQVLTLEN GNHLWRTIQC KPHYPKSDGI CIDGILYYTA GFDMRARVSM
301: VVCFDVRSEK FSFINIHVFM LMNDSCTLIN YKGKLGALQF TCLSPKRLRF WVLVNAEKNI WTKCIYALPP LWNNLVQHTE LAIVGMTDGG EVVLSQYCLI
401: YAFYIYYFNL ESKSLTRVQI QDVEMFKRTR VYTSLGYVEN FKLM

Arabidopsis Description

F-box and associated interaction domains-containing protein [Source:UniProtKB/TrEMBL;Acc:B3H7F2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.