Factsheet for Bra021780.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
plasma membrane 2
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY19131	Canola	mitochondrion	97.98	97.98
Bra021769.1-P	Field mustard	cytosol	48.57	71.36
Bra021786.1-P	Field mustard	mitochondrion	42.69	68.83
Bra021767.1-P	Field mustard	cytosol	43.03	64.48
Bra021785.1-P	Field mustard	mitochondrion	40.84	63.61
Bra027364.1-P	Field mustard	mitochondrion	41.18	62.5
Bra021784.1-P	Field mustard	plastid	39.83	60.93
Bra021782.1-P	Field mustard	plastid	39.33	60.62
Bra021783.1-P	Field mustard	mitochondrion	39.83	60.61
Bra021772.1-P	Field mustard	plastid	39.5	60.26
Bra023809.1-P	Field mustard	mitochondrion	32.94	59.76
Bra039989.1-P	Field mustard	cytosol	38.82	57.32
Bra021789.1-P	Field mustard	cytosol	48.07	56.08
AT3G23960.1	Thale cress	cytosol	30.08	44.53
Bra005628.1-P	Field mustard	cytosol	28.07	40.93
Bra005629.1-P	Field mustard	cytosol	25.55	39.9
Bra022877.1-P	Field mustard	cytosol	26.22	39.8
Bra021702.1-P	Field mustard	cytosol, peroxisome, plastid	26.55	39.6
Bra021730.1-P	Field mustard	cytosol	26.72	39.26
Bra005631.1-P	Field mustard	cytosol	9.41	39.16
Bra034016.1-P	Field mustard	cytosol	25.88	38.31
Bra009129.1-P	Field mustard	cytosol	24.71	37.03
Bra034015.1-P	Field mustard	cytosol, nucleus, peroxisome	24.54	36.68
Bra036901.1-P	Field mustard	cytosol	25.88	36.67
Bra036902.1-P	Field mustard	cytosol	24.54	35.7
Bra022876.1-P	Field mustard	cytosol	9.08	34.84
Bra033850.1-P	Field mustard	cytosol	16.3	34.64
Bra019597.1-P	Field mustard	nucleus	10.42	34.25
Bra017982.1-P	Field mustard	cytosol	22.69	33.09
Bra033908.1-P	Field mustard	cytosol	21.34	32.9
Bra017983.1-P	Field mustard	cytosol	21.68	31.85
Bra000514.1-P	Field mustard	cytosol, nucleus, plasma membrane	25.21	25.95
Bra023245.1-P	Field mustard	cytosol	15.29	18.84
Bra021777.1-P	Field mustard	cytosol	28.74	18.69

Protein Annotations

Gene3D:1.10.287.70	MapMan:24.3.9	Gene3D:3.40.190.10	EnsemblPlantsGene:Bra021780	EnsemblPlants:Bra021780.1	EnsemblPlants:Bra021780.1-P
InterPro:F-box-assoc_dom_typ3	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0004871
GO:GO:0004970	GO:GO:0005215	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0035235
GO:GO:0038023	InterPro:IPR001810	InterPro:Iontro_rcpt	UniProt:M4DZ33	PFAM:PF00646	PFAM:PF08268
PANTHER:PTHR31790	PANTHER:PTHR31790:SF47	SMART:SM00079	SUPFAM:SSF53850	SUPFAM:SSF81383	TIGRFAMs:TIGR01640
TMHMM:TMhelix	UniParc:UPI0002544F19	SEG:seg	:	:	:

Description

AT2G32400 (E=5e-091) GLR5, GLR3.7, ATGLR3.7 | GLR5 (GLUTAMATE RECEPTOR 5); intracellular ligand-gated ion channel

Coordinates

chrA04:-:14423572..14426871

Molecular Weight (calculated)

67044.8 Da

IEP (calculated)

8.510

GRAVY (calculated)

-0.168

Length

595 amino acids

Sequence
(BLAST)

001: MTSRRTTRSM TSLHRNSLPV PDELAMEIFS RLPSKAMAMC RCACKLWSSM LRRQDFTELF LTKSCARPQL LFACNDHSVS KYVFILSPQP ENPEENSHVV
101: ASNHLACFPS SYELFGCTNG FLCYGAKPIL EGRINPAYVP VICNPSTGQS LILPTLKSRM RFGIESYLGY EPIAKEFKVL SMESSYVSGH SVRHQVLTLG
201: TKKLSWRLVE CCIPHRSSSK WICISGVLYY AARAVGSSVN SMVVSFDLRS EKFSSVKFGK AMPDSTTLVN YDGKLGLLMS GDSHDVTRSR TSLELWVLRD
301: AAKQEWSKNV YVLPSSWEDA VSEDMCIAGM VGVNEIVLAH WSQRVPSYVI YFNVERKTIT KVGIQGPEAF TAPNLHHSLG MGRSRLVPLD SIEEYERALK
401: LGPNALGGVA AIVDELPYIE LFLAERTGFK IVGEPFMNRG WGFAFKRDSP LAIDMSTAIL KLTETREQKR ILKKWLCQKS CGEKSDWNHP EPNQFHLKSF
501: EGLYLFCVAI TVSAFLVFVL RMIRQFVRYR RSERTSLTPR ASLSSSPTTT RLWGFMLGFV EFVDEKEEAT RSDDDSNNNP SQVVELQGDS EVRQS

Best Arabidopsis Sequence Match ( AT1G53790.1 )
(BLAST)

001: MVRDIVDDPL DEDDIALVKT YGLVPYSAPI KKVEKEIKEL TEKINDLCGI KESDTGLAPL SKQMMQEGQP LQVGYVSCFR YIPIDLLMDI FSRVPAKSIA
101: RFRCVSKLWE SILCRPDFKE LFMTMSSIRP PLLLFTFQDD DGNLFFFSSP HPQIPCNENT SLVPTRYHVQ HTTDSFSEIG SPLCGFICRR GKRNLDTMVI
201: CNPVTGESVS LPKVELKSIN TETRPYLGYD PVRKQLKVLC IKSDDIPNTC DEHQVLTLEN GNHLWRTIQC KPHYPKSDGI CIDGILYYTA GFDMRARVSM
301: VVCFDVRSEK FSFINIHVFM LMNDSCTLIN YKGKLGALQF TCLSPKRLRF WVLVNAEKNI WTKCIYALPP LWNNLVQHTE LAIVGMTDGG EVVLSQYCLI
401: YAFYIYYFNL ESKSLTRVQI QDVEMFKRTR VYTSLGYVEN FKLM

Arabidopsis Description

F-box and associated interaction domains-containing protein [Source:UniProtKB/TrEMBL;Acc:B3H7F2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.