Factsheet for Bra022877.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
nucleus 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX79454	Canola	cytosol	65.05	84.72
Bra005631.1-P	Field mustard	cytosol	17.35	47.55
Bra005629.1-P	Field mustard	cytosol	45.41	46.72
Bra021772.1-P	Field mustard	plastid	44.39	44.62
Bra034016.1-P	Field mustard	cytosol	43.11	42.04
Bra034015.1-P	Field mustard	cytosol, nucleus, peroxisome	42.35	41.71
Bra021767.1-P	Field mustard	cytosol	41.33	40.81
Bra021782.1-P	Field mustard	plastid	39.8	40.41
Bra021784.1-P	Field mustard	plastid	39.8	40.1
Bra036901.1-P	Field mustard	cytosol	42.6	39.76
Bra021769.1-P	Field mustard	cytosol	41.07	39.75
Bra021785.1-P	Field mustard	mitochondrion	38.52	39.53
Bra005628.1-P	Field mustard	cytosol	40.82	39.22
Bra027364.1-P	Field mustard	mitochondrion	38.78	38.78
Bra036902.1-P	Field mustard	cytosol	40.31	38.63
Bra021783.1-P	Field mustard	mitochondrion	38.52	38.62
Bra009129.1-P	Field mustard	cytosol	39.03	38.54
Bra021730.1-P	Field mustard	cytosol	38.78	37.53
Bra023809.1-P	Field mustard	mitochondrion	31.38	37.5
Bra039989.1-P	Field mustard	cytosol	38.27	37.22
Bra021702.1-P	Field mustard	cytosol, peroxisome, plastid	36.48	35.84
Bra017982.1-P	Field mustard	cytosol	36.99	35.54
Bra019597.1-P	Field mustard	nucleus	16.07	34.81
Bra017983.1-P	Field mustard	cytosol	35.46	34.32
Bra021786.1-P	Field mustard	mitochondrion	31.89	33.88
Bra033908.1-P	Field mustard	cytosol	32.14	32.64
Bra033850.1-P	Field mustard	cytosol	22.96	32.14
Bra022876.1-P	Field mustard	cytosol	12.5	31.61
Bra021789.1-P	Field mustard	cytosol	41.07	31.57
Bra021780.1-P	Field mustard	mitochondrion	39.8	26.22
Bra000514.1-P	Field mustard	cytosol, nucleus, plasma membrane	33.16	22.49
Bra023245.1-P	Field mustard	cytosol	23.47	19.05
Bra021777.1-P	Field mustard	cytosol	39.03	16.72

Protein Annotations

EnsemblPlants:Bra022877.1	EnsemblPlants:Bra022877.1-P	EnsemblPlantsGene:Bra022877	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-assoc_dom_typ3	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810
PANTHER:PTHR31790	PANTHER:PTHR31790:SF10	PFAM:PF00646	PFAM:PF08268	SMART:SM00256	SUPFAM:SSF81383
TIGRFAMs:TIGR01640	UniParc:UPI000254038E	UniProt:M4E277	MapMan:35.1	:	:

Description

AT2G31470 (E=1e-090) | F-box family protein

Coordinates

chrA03:+:7532848..7534026

Molecular Weight (calculated)

44654.8 Da

IEP (calculated)

8.510

GRAVY (calculated)

0.086

Length

392 amino acids

Sequence
(BLAST)

001: MELQLNTESK ILLINGRENS KPLPIDLVME ILSRLPVKSI GRCLCVSKLW ASILRLPYFS TLFTTRSSVR PHMLLSYGEK GQVLFFSSPQ LKNPNENASL
101: TANYLSRVPY GGYSCHINDP VHGMVCLTYI DKEISKEHII CNPSTGQTLT LPKVKTTMVG VRSIFKLVSF LGYVPTDKQF KVLSMEWNSD HIILGPQHQV
201: LTLGTQKLEW RLTKCCMSHY FCPKGICING VLYYRALDAY TGISMIVCFD FKSEEFSYIE VVKTFTTLVL DGPLINYNGK LGLLIFEGYP WGDRARSFEL
301: LVIGDLEKQE WSTHKYMLPP TWKNVVGEGM FCFAGFFGTN TIVLSRRSYV IYYNIDKNTI VKVGIQGVEA FKCFDRSIFL HHVEGLMLVQ EF

Best Arabidopsis Sequence Match ( AT2G31470.1 )
(BLAST)

001: MKSRRQNVSV ARQTILGRDE NFEPIPIDLV IEIFSRSPVK SIARCRCVSK LWASILRLPY FTELYLTKSC ARPRLLFACQ KHRELFFFST PQPHNPNESS
101: SPLAASFHMK IPFDGRFNII SPIGGLVFVR YEQILKGRKT PEFVSAICNP STGQSLTLPK PKTRKRIWGT SHFGYDPIEK QFKVLSMNIG DGVYKEHYVL
201: TLGTENLSWR RIECSIPHVH GSKGICINGV LYYRAKADMF SGTLMIVCFD VRFEKFSYIK ILKPTTTLIS YNGKLASLVW EGPSYICGKR FEMWVLGDPE
301: KHEWLKHTYE LRPRWQNVLG EDLLIFAGMT GTNEIVLSPK YPSHPFYVFY YNLERNTIRR VEIQGMGAFK VNEDYIFLDH VEDVKLI

Arabidopsis Description

DORF-box protein DOR [Source:UniProtKB/Swiss-Prot;Acc:Q5BPS3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.