CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra022877.1-P	Field mustard	cytosol	84.72	65.05
CDY12239	Canola	mitochondrion	50.5	54.48
CDY42092	Canola	cytosol	25.25	53.9
CDY72470	Canola	golgi, nucleus, plasma membrane	60.13	46.53
CDY42091	Canola	mitochondrion	45.85	44.66
CDY70182	Canola	extracellular	19.6	43.38
CDY46037	Canola	extracellular	19.6	43.38
CDY15326	Canola	cytosol	18.27	42.97
CDY60955	Canola	cytosol, extracellular, plastid, vacuole	43.19	42.35
CDY18160	Canola	cytosol	24.25	41.01
CDY29771	Canola	cytosol, plastid	43.52	39.34
CDY15357	Canola	cytosol, nucleus, plastid	6.98	38.18
CDY65287	Canola	cytosol	12.29	38.14
CDY71858	Canola	cytosol, mitochondrion, nucleus, plastid	14.95	35.71
CDY60961	Canola	cytosol	45.85	34.76
CDY15336	Canola	plastid	45.18	34.69
CDY15359	Canola	cytosol, plastid	45.51	34.42
CDY15324	Canola	cytosol	43.52	34.2
CDY19134	Canola	mitochondrion	43.19	34.03
CDY15332	Canola	cytosol	43.85	33.85
CDY15327	Canola	cytosol	43.19	33.77
CDY52273	Canola	cytosol, plastid	33.22	33.56
CDX98860	Canola	cytosol	44.85	33.42
CDY15352	Canola	mitochondrion	44.52	33.17
CDY15333	Canola	mitochondrion	41.86	32.81
CDX70134	Canola	cytosol	42.86	32.74
CDY70684	Canola	cytosol	22.26	32.68
CDY19137	Canola	cytosol, mitochondrion, plastid	43.85	32.51
CDY12627	Canola	cytosol	42.86	32.41
CDX97551	Canola	mitochondrion	42.19	32.4
CDY42089	Canola	cytosol	43.19	31.86
CDY67066	Canola	cytosol, mitochondrion, nucleus, peroxisome	42.86	31.85
CDY52272	Canola	cytosol	2.33	31.82
CDY19088	Canola	cytosol	42.19	31.36
CDY30662	Canola	extracellular, mitochondrion	14.29	31.16
CDY67625	Canola	mitochondrion	26.58	31.13
CDY19132	Canola	mitochondrion	40.53	31.04
CDY51358	Canola	cytosol	38.54	30.69
CDY15344	Canola	mitochondrion	35.22	30.64
CDY29772	Canola	cytosol	40.86	30.15
CDY42088	Canola	cytosol	40.2	29.58
CDX79453	Canola	plastid	37.21	29.47
CDY12626	Canola	cytosol	36.54	29.41
CDY15358	Canola	cytosol, extracellular, plastid	13.62	29.29
CDY65288	Canola	mitochondrion	26.58	28.99
CDY31173	Canola	cytosol, mitochondrion	37.54	28.39
CDY67859	Canola	cytosol, mitochondrion	35.55	28.31
CDY66545	Canola	cytosol, peroxisome, plastid	34.22	28.07
CDY72410	Canola	cytosol	34.55	28.03
CDX97874	Canola	extracellular	24.92	27.99
CDY08137	Canola	cytosol	37.87	27.94
CDY60959	Canola	cytosol, mitochondrion, plastid	25.58	27.8
CDY08136	Canola	cytosol	37.21	27.65
CDY08200	Canola	cytosol, golgi, mitochondrion, plasma membrane	39.87	27.15
CDX83262	Canola	cytosol, mitochondrion	35.88	27.14
CDY30661	Canola	cytosol	20.6	26.72
CDY05937	Canola	cytosol	29.9	26.63
CDY66546	Canola	cytosol	21.26	25.6
CDY10678	Canola	cytosol	30.23	23.58
CDY29942	Canola	cytosol	22.92	23.23
CDY19127	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	44.19	23.13
CDY19131	Canola	mitochondrion	44.19	22.35
CDY15353	Canola	cytosol	34.88	20.39
CDY12260	Canola	cytosol	21.26	20.06
CDY12259	Canola	cytosol	20.27	18.83
CDY00206	Canola	nucleus	11.3	18.78
CDY26564	Canola	mitochondrion	23.26	15.28
CDY15999	Canola	cytosol, mitochondrion	26.58	12.42
CDY15342	Canola	cytosol	9.3	12.28

Protein Annotations

EnsemblPlants:CDX79454	EnsemblPlantsGene:GSBRNA2T00132188001	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-assoc_dom_typ3	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR31790
PANTHER:PTHR31790:SF47	PFAM:PF00646	PFAM:PF08268	ProteinID:CDX79454	ProteinID:CDX79454.1	SMART:SM00256
SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI0004EE96D6	MapMan:35.1	:	:

Description

BnaC03g17900D

Coordinates

chrLK031818:+:127996..129171

Molecular Weight (calculated)

34287.0 Da

IEP (calculated)

8.884

GRAVY (calculated)

0.061

Length

301 amino acids

Sequence
(BLAST)

001: MELQLNTESK ILLNGRENSK PLPIDLVMEI LSRLPVKSIG RCLCVSKLWA SILRLPYFTT LFTTRSSVRP HMLLAYGEKG QVLFFSSPQL KNPNENASLT
101: ANYLSRHQIL TLGTQKLEWR LTKCCMPHSF CPKGICINGV LYYRAFYAYT GISVIVCFDF KSEEFSYIEV VKTFKTLISD GPLINYNGKL GSLIFKGHPW
201: GDRARSFELL VIGDLEKQEW STHKYMLPPT WKNVVGEGML GFAGFFGTNT IVLSRHSYVI YYNIEKNTIV KVGIQGVEAF KCFDCSIFLD HVEGLKLVQE
301: F

Best Arabidopsis Sequence Match ( AT2G19630.1 )
(BLAST)

001: MKTSLRLEDG TKNSLQIPID LIIEIFLRLS VNSIARCRCV SKQWASTLSR PYFTELFLTR SLARPKLLFA YRKGSDYLFL SSPQLQNPDD DHKKSSPVVV
101: NYHMHHILTL GSGNMSWRTI QCCIPHRSFD GGICIDGLIY YYAGVNNNDI VIVCFDVRSE EFRFIIGALH HGSLINYNGK LSLYLPSTVY SRFNGVIRSI
201: KLWVLEDAKR QEWSEHTYIL PAMHDIMKTT DLRCVGMTQT KEFVFWSIKG MRFYVFYYNI ERNTIKKVEM QGMEAFKESN VYTFLDHVED VKLMQFF

Arabidopsis Description

Putative F-box protein At2g19630 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUN0]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.