Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY08137 | Canola | cytosol | 93.0 | 58.58 |
| CDY05937 | Canola | cytosol | 64.2 | 48.82 |
| CDY08136 | Canola | cytosol | 72.37 | 45.93 |
| CDY72410 | Canola | cytosol | 65.76 | 45.55 |
| CDY70684 | Canola | cytosol | 33.46 | 41.95 |
| CDY46037 | Canola | extracellular | 21.4 | 40.44 |
| CDY70182 | Canola | extracellular | 21.4 | 40.44 |
| CDY15357 | Canola | cytosol, nucleus, plastid | 8.17 | 38.18 |
| CDY65288 | Canola | mitochondrion | 40.47 | 37.68 |
| CDY15326 | Canola | cytosol | 18.68 | 37.5 |
| CDY42092 | Canola | cytosol | 19.07 | 34.75 |
| AT3G49450.1 | Thale cress | cytosol | 54.09 | 34.75 |
| CDY18160 | Canola | cytosol | 22.96 | 33.15 |
| CDY29942 | Canola | cytosol | 38.13 | 33.0 |
| CDY12626 | Canola | cytosol | 47.08 | 32.35 |
| CDX97874 | Canola | extracellular | 33.46 | 32.09 |
| CDY52272 | Canola | cytosol | 2.72 | 31.82 |
| CDY67859 | Canola | cytosol, mitochondrion | 46.3 | 31.48 |
| CDY30662 | Canola | extracellular, mitochondrion | 16.34 | 30.43 |
| CDY19088 | Canola | cytosol | 44.75 | 28.4 |
| CDY12627 | Canola | cytosol | 43.97 | 28.39 |
| CDY12239 | Canola | mitochondrion | 30.74 | 28.32 |
| CDY67066 | Canola | cytosol, mitochondrion, nucleus, peroxisome | 44.36 | 28.15 |
| CDY15324 | Canola | cytosol | 41.25 | 27.68 |
| CDY31173 | Canola | cytosol, mitochondrion | 42.02 | 27.14 |
| CDY15327 | Canola | cytosol | 40.08 | 26.75 |
| CDX98860 | Canola | cytosol | 42.02 | 26.73 |
| CDX83262 | Canola | cytosol, mitochondrion | 41.25 | 26.63 |
| CDX79454 | Canola | cytosol | 31.13 | 26.58 |
| CDY42091 | Canola | mitochondrion | 31.91 | 26.54 |
| CDY42089 | Canola | cytosol | 42.02 | 26.47 |
| CDY19134 | Canola | mitochondrion | 39.3 | 26.44 |
| CDY15332 | Canola | cytosol | 40.08 | 26.41 |
| CDY19137 | Canola | cytosol, mitochondrion, plastid | 41.63 | 26.35 |
| CDY15333 | Canola | mitochondrion | 39.3 | 26.3 |
| CDY15336 | Canola | plastid | 40.08 | 26.28 |
| CDX70134 | Canola | cytosol | 40.08 | 26.14 |
| CDY60955 | Canola | cytosol, extracellular, plastid, vacuole | 30.35 | 25.41 |
| CDY15352 | Canola | mitochondrion | 39.69 | 25.25 |
| CDY19132 | Canola | mitochondrion | 38.52 | 25.19 |
| CDY42088 | Canola | cytosol | 40.08 | 25.18 |
| CDY15344 | Canola | mitochondrion | 33.85 | 25.14 |
| CDY60961 | Canola | cytosol | 38.52 | 24.94 |
| CDY15359 | Canola | cytosol, plastid | 38.52 | 24.87 |
| CDY10678 | Canola | cytosol | 35.8 | 23.83 |
| CDY52273 | Canola | cytosol, plastid | 27.63 | 23.83 |
| CDY51358 | Canola | cytosol | 35.02 | 23.81 |
| CDY72470 | Canola | golgi, nucleus, plasma membrane | 35.8 | 23.65 |
| CDX97551 | Canola | mitochondrion | 35.8 | 23.47 |
| CDY66545 | Canola | cytosol, peroxisome, plastid | 33.46 | 23.43 |
| CDY29772 | Canola | cytosol | 36.97 | 23.28 |
| CDY29771 | Canola | cytosol, plastid | 29.96 | 23.12 |
| CDX79453 | Canola | plastid | 33.07 | 22.37 |
| CDY08200 | Canola | cytosol, golgi, mitochondrion, plasma membrane | 36.97 | 21.49 |
| CDY15353 | Canola | cytosol | 39.69 | 19.81 |
| CDY66546 | Canola | cytosol | 19.07 | 19.6 |
| CDY60959 | Canola | cytosol, mitochondrion, plastid | 19.84 | 18.41 |
| CDY19131 | Canola | mitochondrion | 38.13 | 16.47 |
| CDY19127 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 35.8 | 16.0 |
| CDY30661 | Canola | cytosol | 14.01 | 15.52 |
| CDY00206 | Canola | nucleus | 10.89 | 15.47 |
| CDY15342 | Canola | cytosol | 11.67 | 13.16 |
| CDY26564 | Canola | mitochondrion | 23.35 | 13.1 |
| CDY12259 | Canola | cytosol | 16.34 | 12.96 |
| CDY12260 | Canola | cytosol | 15.18 | 12.23 |
| CDY15999 | Canola | cytosol, mitochondrion | 24.12 | 9.63 |
| CDY15358 | Canola | cytosol, extracellular, plastid | 2.72 | 5.0 |
| CDY71858 | Canola | cytosol, mitochondrion, nucleus, plastid | 1.56 | 3.17 |
| CDY65287 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY67625 | EnsemblPlantsGene:GSBRNA2T00065219001 | InterPro:F-box-assoc_dom_typ3 | InterPro:F-box-assoc_interact_dom | PANTHER:PTHR31790 | PANTHER:PTHR31790:SF10 |
| PFAM:PF08268 | ProteinID:CDY67625 | ProteinID:CDY67625.1 | TIGRFAMs:TIGR01640 | UniParc:UPI0004EF3523 | UniProt:A0A078JMG1 |
| MapMan:35.1 | : | : | : | : | : |
Description
BnaCnng55700DBnaCnng55700D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JMG1]
Coordinates
chrLK036327:-:8168..8941
Molecular Weight (calculated)
29556.0 Da
IEP (calculated)
8.458
GRAVY (calculated)
-0.105
Length
257 amino acids
Sequence
(BLAST)
(BLAST)
001: MICNPSTGGF KLLPKVKTRR GRVMTYLGYD PIEEVYKVLC MTACERPYIQ KAEQHQVLTL GTGKLNWRMI ECPISHYPRP RDNEICINGV LYYSALESGS
101: WRTSTSMIVC FDIRSEKLKF IVDEAFKDFK SPSTLINYKG KLGILSPHTS GFMDGIFIGF ELWVIDDIEK PTWWRHTHIF PPLWDTLVAQ ARINIVGTTG
201: DSEIMFSPTV VSNPFYIFCY NMETRSIRRV EIKGFGPVTG QNIYTFLNHV ENVKLIT
101: WRTSTSMIVC FDIRSEKLKF IVDEAFKDFK SPSTLINYKG KLGILSPHTS GFMDGIFIGF ELWVIDDIEK PTWWRHTHIF PPLWDTLVAQ ARINIVGTTG
201: DSEIMFSPTV VSNPFYIFCY NMETRSIRRV EIKGFGPVTG QNIYTFLNHV ENVKLIT
001: MSAMMKKRKR KVSKENVALT ISSSVGEYGE NSGTLPTDLM VEILSRVPAK SAARFRCVSN DWNSLLRSPY LTNLFLKRSS ARPHLLITFQ AEGKWSFFSS
101: PEYLISDQNS NLVVVDNHMD VPKDYSFGVC VPVCGLMCTS NEWVLSRKRD ARMMICNPST GQFKSLPKVR SCRGNVITYI GYNPIEKQYK VLCMTIREKP
201: FKFKAEEHQV LTLGTGKLKW RMLECSVDHY PYYHGSICIN GVLFYLAMKS ESKEYMTVSF HMKDENFMFI PNQDLLSTLI NYKGRLGGIR HKSFGFMDGG
301: DVGFELWILD VVNQEWIRSI HVLPPMWKDV VGETRVYFVG IIGSCEVVFS PFVKSNPFYI FHLDMKSNSI TRVEIKGTGP LEGQAVYTFV NHIENVNLIM
101: PEYLISDQNS NLVVVDNHMD VPKDYSFGVC VPVCGLMCTS NEWVLSRKRD ARMMICNPST GQFKSLPKVR SCRGNVITYI GYNPIEKQYK VLCMTIREKP
201: FKFKAEEHQV LTLGTGKLKW RMLECSVDHY PYYHGSICIN GVLFYLAMKS ESKEYMTVSF HMKDENFMFI PNQDLLSTLI NYKGRLGGIR HKSFGFMDGG
301: DVGFELWILD VVNQEWIRSI HVLPPMWKDV VGETRVYFVG IIGSCEVVFS PFVKSNPFYI FHLDMKSNSI TRVEIKGTGP LEGQAVYTFV NHIENVNLIM
Arabidopsis Description
F-box and associated interaction domains-containing protein [Source:TAIR;Acc:AT3G49450]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.