CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra005631.1-P	Field mustard	cytosol	92.91	91.61
CDY12239	Canola	mitochondrion	97.87	49.46
CDY15326	Canola	cytosol	34.04	37.5
CDY46037	Canola	extracellular	35.46	36.76
CDY70182	Canola	extracellular	35.46	36.76
CDY52272	Canola	cytosol	5.67	36.36
CDY15357	Canola	cytosol, nucleus, plastid	12.77	32.73
CDY18160	Canola	cytosol	37.59	29.78
CDY30662	Canola	extracellular, mitochondrion	28.37	28.99
CDX79454	Canola	cytosol	53.9	25.25
CDY42091	Canola	mitochondrion	52.48	23.95
CDX97874	Canola	extracellular	40.43	21.27
CDY70684	Canola	cytosol	29.79	20.49
CDY65288	Canola	mitochondrion	37.59	19.2
CDY67625	Canola	mitochondrion	34.75	19.07
CDY60955	Canola	cytosol, extracellular, plastid, vacuole	39.72	18.24
CDY29771	Canola	cytosol, plastid	40.43	17.12
CDY72470	Canola	golgi, nucleus, plasma membrane	44.68	16.2
CDY15324	Canola	cytosol	41.84	15.4
CDX70134	Canola	cytosol	42.55	15.23
CDX98860	Canola	cytosol	43.26	15.1
CDY51358	Canola	cytosol	40.43	15.08
CDY19134	Canola	mitochondrion	40.43	14.92
CDY15336	Canola	plastid	41.13	14.8
CDY15333	Canola	mitochondrion	39.72	14.58
CDY67859	Canola	cytosol, mitochondrion	39.01	14.55
CDY12626	Canola	cytosol	38.3	14.44
CDY15327	Canola	cytosol	39.01	14.29
CDY60961	Canola	cytosol	39.72	14.11
CDY15332	Canola	cytosol	39.01	14.1
CDY15359	Canola	cytosol, plastid	39.72	14.07
CDX97551	Canola	mitochondrion	39.01	14.03
CDY19132	Canola	mitochondrion	39.01	13.99
CDY42089	Canola	cytosol	40.43	13.97
CDY12627	Canola	cytosol	39.01	13.82
CDY29942	Canola	cytosol	29.08	13.8
CDY15352	Canola	mitochondrion	39.01	13.61
CDY19088	Canola	cytosol	39.01	13.58
CDY67066	Canola	cytosol, mitochondrion, nucleus, peroxisome	39.01	13.58
CDY19137	Canola	cytosol, mitochondrion, plastid	38.3	13.3
CDY72410	Canola	cytosol	33.33	12.67
CDY42088	Canola	cytosol	36.17	12.47
CDY29772	Canola	cytosol	34.75	12.01
CDY08136	Canola	cytosol	34.04	11.85
CDY08137	Canola	cytosol	33.33	11.52
CDY60959	Canola	cytosol, mitochondrion, plastid	21.99	11.19
CDY05937	Canola	cytosol	26.24	10.95
CDX83262	Canola	cytosol, mitochondrion	30.5	10.8
CDY31173	Canola	cytosol, mitochondrion	29.79	10.55
CDY08200	Canola	cytosol, golgi, mitochondrion, plasma membrane	32.62	10.41
CDY52273	Canola	cytosol, plastid	21.99	10.4
CDY15353	Canola	cytosol	36.88	10.1
CDY66545	Canola	cytosol, peroxisome, plastid	26.24	10.08
CDY19127	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	39.72	9.74
CDY19131	Canola	mitochondrion	39.01	9.24
CDY15342	Canola	cytosol	14.18	8.77
CDX79453	Canola	plastid	23.4	8.68
CDY15344	Canola	mitochondrion	21.28	8.67
CDY10678	Canola	cytosol	21.28	7.77
CDY66546	Canola	cytosol	12.77	7.2
CDY26564	Canola	mitochondrion	20.57	6.33
CDY12260	Canola	cytosol	11.35	5.02
CDY15999	Canola	cytosol, mitochondrion	21.28	4.66
CDY12259	Canola	cytosol	10.64	4.63
CDY71858	Canola	cytosol, mitochondrion, nucleus, plastid	2.13	2.38
CDY65287	Canola	cytosol	0.0	0.0
CDY00206	Canola	nucleus	0.0	0.0
CDY30661	Canola	cytosol	0.0	0.0
CDY15358	Canola	cytosol, extracellular, plastid	0.0	0.0

Protein Annotations

EnsemblPlants:CDY42092	EnsemblPlantsGene:GSBRNA2T00074134001	InterPro:F-box-assoc_dom_typ3	PANTHER:PTHR31790	PANTHER:PTHR31790:SF47	PFAM:PF08268
ProteinID:CDY42092	ProteinID:CDY42092.1	UniParc:UPI0004EF180E	UniProt:A0A078HWB2	MapMan:35.1	:

Description

BnaA05g10940DBnaA05g10940D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HWB2]

Coordinates

chrLK032514:+:173594..174019

Molecular Weight (calculated)

16033.3 Da

IEP (calculated)

6.943

GRAVY (calculated)

-0.187

Length

141 amino acids

Sequence
(BLAST)

001: MSEKFSCIEL DTTFKEAVFN QSMINYNGKL GSVKINRFKL GGTHSIELMS IGDSEKQEWS KHTYILPPVL KNVVGKDVLR FAGVTDSNEI VFGHPSCVIY
101: YNIEKYTIVK VRIQGMEAFQ STNLSTFLDH KEVDPKLMEA F

Best Arabidopsis Sequence Match ( AT5G65850.1 )
(BLAST)

001: MRTLRRNVTE NRLTISRRRT EKKTSPNKTE KSVQIPVDII IEILLRLPAK SIATCRCVSK LWISVICRQD FTELFLTRSL HRPQLLFCCK KDGNLFFFSS
101: PQLQNPYENS SAISLKNFSL CYKISRPVNG LICFKRKEMN ETVTVICNPS TGHTLSLPKP MKTSIGPSRF FVYEPIQKQF KVLLSYKSDE HQVLTLGTGE
201: LSWRIIECSM PHILGMSEIC INGVLYYPAI NLSSGDYIIV CFDVRSEKFR FITVMEEFIK AAHDGTLINY NGKLASLVSE RYCFVDGRSK SIELWVLQDA
301: EKKEWSKHTY VLPAWWQHRI GTLNLRFVGV TRTNEIMLSP CYQTVPFDVY YFNIERKTMM SVAIQGMEAF QGHLVFTYLD HVENVKLLHN MF

Arabidopsis Description

F-box protein At5g65850 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHP3]
SUBAcon: [cytosol,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.