CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra036901.1-P	Field mustard	cytosol	96.7	76.67
CDY65287	Canola	cytosol	13.21	45.36
CDY46037	Canola	extracellular	18.32	44.85
CDY70182	Canola	extracellular	18.32	44.85
CDY71858	Canola	cytosol, mitochondrion, nucleus, plastid	16.82	44.44
AT2G19630.1	Thale cress	cytosol, nucleus, plasma membrane	39.64	44.44
CDY12239	Canola	mitochondrion	36.94	44.09
CDX79454	Canola	cytosol	39.34	43.52
CDY29772	Canola	cytosol	53.15	43.38
CDY15326	Canola	cytosol	16.52	42.97
CDY60955	Canola	cytosol, extracellular, plastid, vacuole	38.14	41.37
CDY42092	Canola	cytosol	17.12	40.43
CDY15357	Canola	cytosol, nucleus, plastid	6.61	40.0
CDY42091	Canola	mitochondrion	36.94	39.81
CDY15344	Canola	mitochondrion	40.24	38.73
CDY52273	Canola	cytosol, plastid	32.73	36.58
CDY67066	Canola	cytosol, mitochondrion, nucleus, peroxisome	44.44	36.54
CDY18160	Canola	cytosol	19.52	36.52
CDY70684	Canola	cytosol	21.92	35.61
CDY19088	Canola	cytosol	43.24	35.56
CDX70134	Canola	cytosol	41.74	35.28
CDY12627	Canola	cytosol	42.04	35.18
CDY15336	Canola	plastid	41.14	34.95
CDY15327	Canola	cytosol	40.24	34.81
CDY42089	Canola	cytosol	42.64	34.8
CDY66545	Canola	cytosol, peroxisome, plastid	38.14	34.6
CDY12626	Canola	cytosol	38.74	34.49
CDY15324	Canola	cytosol	39.34	34.2
CDY15352	Canola	mitochondrion	41.44	34.16
CDY15332	Canola	cytosol	39.64	33.85
CDY19134	Canola	mitochondrion	38.74	33.77
CDY60961	Canola	cytosol	40.24	33.75
CDY72470	Canola	golgi, nucleus, plasma membrane	39.34	33.68
CDY15359	Canola	cytosol, plastid	40.24	33.67
CDY15358	Canola	cytosol, extracellular, plastid	14.11	33.57
CDY30662	Canola	extracellular, mitochondrion	13.81	33.33
CDY19137	Canola	cytosol, mitochondrion, plastid	40.54	33.25
CDX98860	Canola	cytosol	40.24	33.17
CDY67859	Canola	cytosol, mitochondrion	37.54	33.07
CDX97551	Canola	mitochondrion	38.44	32.65
CDY15333	Canola	mitochondrion	37.54	32.55
CDY65288	Canola	mitochondrion	26.73	32.25
CDY42088	Canola	cytosol	38.44	31.3
CDY51358	Canola	cytosol	35.14	30.95
CDY19132	Canola	mitochondrion	36.04	30.53
CDY67625	Canola	mitochondrion	23.12	29.96
CDY31173	Canola	cytosol, mitochondrion	35.44	29.65
CDX79453	Canola	plastid	33.63	29.47
CDY08137	Canola	cytosol	36.04	29.41
CDX83262	Canola	cytosol, mitochondrion	35.14	29.4
CDY19127	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	50.45	29.22
CDY10678	Canola	cytosol	33.33	28.76
CDY72410	Canola	cytosol	31.53	28.3
CDY60959	Canola	cytosol, mitochondrion, plastid	23.42	28.16
CDY05937	Canola	cytosol	28.53	28.11
CDY08136	Canola	cytosol	32.73	26.91
CDY66546	Canola	cytosol	20.12	26.8
CDY29942	Canola	cytosol	23.42	26.26
CDY08200	Canola	cytosol, golgi, mitochondrion, plasma membrane	34.83	26.24
CDX97874	Canola	extracellular	18.92	23.51
CDY19131	Canola	mitochondrion	39.34	22.02
CDY30661	Canola	cytosol	15.02	21.55
CDY00206	Canola	nucleus	11.41	20.99
CDY12260	Canola	cytosol	19.22	20.06
CDY15353	Canola	cytosol	30.03	19.42
CDY12259	Canola	cytosol	18.32	18.83
CDY52272	Canola	cytosol	1.2	18.18
CDY26564	Canola	mitochondrion	21.62	15.72
CDY15999	Canola	cytosol, mitochondrion	25.53	13.2
CDY15342	Canola	cytosol	6.91	10.09

Protein Annotations

Gene3D:1.20.1280.50	MapMan:35.1	UniProt:A0A078GW69	EnsemblPlants:CDY29771	ProteinID:CDY29771	ProteinID:CDY29771.1
InterPro:F-box-assoc_dom_typ3	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00043629001	InterPro:IPR001810	PFAM:PF00646	PFAM:PF08268	PANTHER:PTHR31790
PANTHER:PTHR31790:SF47	SMART:SM00256	SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI0004EE14B3	SEG:seg

Description

BnaA01g18950DBnaA01g18950D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GW69]

Coordinates

chrLK032243:+:425047..426309

Molecular Weight (calculated)

38338.8 Da

IEP (calculated)

7.018

GRAVY (calculated)

-0.189

Length

333 amino acids

Sequence
(BLAST)

001: MNTQHRNNVS GDCQSINLRH HNTRSSKPSD HGRESSSALP IPTDLIIEIF SRLSLKSIAI CRCVSKTWAS TLRRQDFTDF YLTKSSARPQ ILLTPVKNCE
101: LFFFSSPQPQ YLQENLPSVV ANYYHEHQVL TLGAPDRSWR MLECCIPHYG DPPKEICING VLYYKSINKS TETYLIVCFD VRSEMFSFIE VKVTLQRALL
201: RGALRNCNGK LGLFISEDNG YFRSSVSERS TSVQLWVLED VEKQEWSDHI YLLPALWKNL VGRDCLFFAG VTLTNEIVLA PSFSSYPFYL YYLNTKRNTV
301: VARLVEIQGI DVSDYYMDHV VLDHVEDVKL YDV

Best Arabidopsis Sequence Match ( AT2G19630.1 )
(BLAST)

001: MKTSLRLEDG TKNSLQIPID LIIEIFLRLS VNSIARCRCV SKQWASTLSR PYFTELFLTR SLARPKLLFA YRKGSDYLFL SSPQLQNPDD DHKKSSPVVV
101: NYHMHHILTL GSGNMSWRTI QCCIPHRSFD GGICIDGLIY YYAGVNNNDI VIVCFDVRSE EFRFIIGALH HGSLINYNGK LSLYLPSTVY SRFNGVIRSI
201: KLWVLEDAKR QEWSEHTYIL PAMHDIMKTT DLRCVGMTQT KEFVFWSIKG MRFYVFYYNI ERNTIKKVEM QGMEAFKESN VYTFLDHVED VKLMQFF

Arabidopsis Description

Putative F-box protein At2g19630 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUN0]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.