CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15324	Canola	cytosol	82.82	84.33
CDY19137	Canola	cytosol, mitochondrion, plastid	84.87	81.53
CDY15352	Canola	mitochondrion	83.33	80.45
CDY60959	Canola	cytosol, mitochondrion, plastid	55.13	77.62
CDY15326	Canola	cytosol	25.13	76.56
CDY15336	Canola	plastid	74.36	73.98
CDY52272	Canola	cytosol	3.85	68.18
CDY15359	Canola	cytosol, plastid	68.21	66.83
CDY60961	Canola	cytosol	66.92	65.74
CDY19134	Canola	mitochondrion	63.33	64.66
CDY15327	Canola	cytosol	63.33	64.16
CDY15333	Canola	mitochondrion	62.56	63.54
CDX97551	Canola	mitochondrion	63.59	63.27
CDY60955	Canola	cytosol, extracellular, plastid, vacuole	49.49	62.87
CDY19132	Canola	mitochondrion	62.56	62.09
CDY52273	Canola	cytosol, plastid	46.41	60.74
CDY51358	Canola	cytosol	58.21	60.05
CDY18160	Canola	cytosol	27.18	59.55
CDY71858	Canola	cytosol, mitochondrion, nucleus, plastid	18.46	57.14
CDY15358	Canola	cytosol, extracellular, plastid	20.26	56.43
CDY15357	Canola	cytosol, nucleus, plastid	7.95	56.36
CDX97874	Canola	extracellular	36.15	52.61
CDY19131	Canola	mitochondrion	76.15	49.92
AT3G23960.1	Thale cress	cytosol	48.46	47.01
CDY46037	Canola	extracellular	15.9	45.59
CDY70182	Canola	extracellular	15.9	45.59
CDX79454	Canola	cytosol	33.85	43.85
CDY12239	Canola	mitochondrion	30.77	43.01
CDX98860	Canola	cytosol	44.1	42.57
CDY15344	Canola	mitochondrion	37.44	42.2
CDY42089	Canola	cytosol	44.1	42.16
CDY19088	Canola	cytosol	42.56	40.99
CDY67066	Canola	cytosol, mitochondrion, nucleus, peroxisome	42.56	40.99
CDY65288	Canola	mitochondrion	28.97	40.94
CDY12627	Canola	cytosol	41.28	40.45
CDX70134	Canola	cytosol	40.77	40.36
CDY67625	Canola	mitochondrion	26.41	40.08
CDY66546	Canola	cytosol	25.64	40.0
CDY29771	Canola	cytosol, plastid	33.85	39.64
CDY42088	Canola	cytosol	41.03	39.12
CDY12626	Canola	cytosol	37.44	39.04
CDY42092	Canola	cytosol	14.1	39.01
CDY66545	Canola	cytosol, peroxisome, plastid	36.67	38.96
CDY72470	Canola	golgi, nucleus, plasma membrane	38.72	38.82
CDY42091	Canola	mitochondrion	30.51	38.51
CDY67859	Canola	cytosol, mitochondrion	36.92	38.1
CDY31173	Canola	cytosol, mitochondrion	37.95	37.19
CDY15353	Canola	cytosol	48.72	36.89
CDY29772	Canola	cytosol	38.21	36.52
CDX79453	Canola	plastid	35.38	36.32
CDY65287	Canola	cytosol	8.97	36.08
CDX83262	Canola	cytosol, mitochondrion	36.67	35.93
CDY08137	Canola	cytosol	36.92	35.29
CDY70684	Canola	cytosol	18.46	35.12
CDY00206	Canola	nucleus	16.15	34.81
CDY30661	Canola	cytosol	20.51	34.48
CDY72410	Canola	cytosol	32.56	34.23
CDY05937	Canola	cytosol	29.23	33.73
CDY10678	Canola	cytosol	32.31	32.64
CDY30662	Canola	extracellular, mitochondrion	11.54	32.61
CDY08136	Canola	cytosol	33.59	32.35
CDY29942	Canola	cytosol	24.1	31.65
CDY08200	Canola	cytosol, golgi, mitochondrion, plasma membrane	35.13	31.0
CDY19127	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	44.62	30.26
CDY12259	Canola	cytosol	21.79	26.23
CDY12260	Canola	cytosol	21.28	26.02
CDY26564	Canola	mitochondrion	24.62	20.96
CDY15999	Canola	cytosol, mitochondrion	28.46	17.24
CDY15342	Canola	cytosol	8.21	14.04

Protein Annotations

EnsemblPlants:CDY15332	EnsemblPlantsGene:GSBRNA2T00085614001	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-assoc_dom_typ3	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR31790
PANTHER:PTHR31790:SF47	PFAM:PF00646	PFAM:PF08268	ProteinID:CDY15332	ProteinID:CDY15332.1	SMART:SM00256
SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI0004EE91E8	UniProt:A0A078FR41	MapMan:35.1	:

Description

BnaC04g42910DBnaC04g42910D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FR41]

Coordinates

chrLK032054:+:99683..100855

Molecular Weight (calculated)

44329.6 Da

IEP (calculated)

9.438

GRAVY (calculated)

-0.126

Length

390 amino acids

Sequence
(BLAST)

001: MTSRRNTRSM TSLHRNSLPV PDDLAMEIFT RLPSKAIARC RCACKLWSSM LRRQDFTELF LTKSCARPRL LFVREDYSVR EFVFITSPQP ENPEENSYVV
101: AANHLARFPR SNGFYGCTNG FFCYGADRFF KGLKKPVRVP VICNPSTGQS LTMPRLNSKK KYGVESYLGY DPIAKEFKVL SMNKSRVSEG WISVEHQVLT
201: LGTKKLSWRL VECCIPHLPS CKWICFSGVL YYAARAVGSL VESMVVCFDL RSEKFSSVKF GKAMPGSTTL VNYNGKLGLL MSGDSYAVTR SSTSFELWVL
301: LDAAQHEWSN HVYVLPPSWE DVVSETMYIA GMVGTNEIVF SPSYQRVPYY VIYFNVERKT ITKAGIQGLE AFQGTSFKTY LNYIENVKLL

Best Arabidopsis Sequence Match ( AT3G23960.1 )
(BLAST)

001: MRSRQLHNVS EDRETLSRRN KRSKTSLNGH IPIDLLIEIF LKLPVKSIAT CRSVSKFWTY VLGRQDFTEL FLTKSSSRPQ LLFACANDNG YFFFSSNQPQ
101: NLDENSSPIA AYPLTHVPKS RDLGPPINGL VSLRGERILK GRIRPVDVSI IYNPSTGESL TLPKTNMTRK KIYTVTSFLG YDPIEKQYKV LSMNMSYEKH
201: PKCEGYQVLT LGTGKLSWRM IKCCLNYQHP LKNSEICING VLYYLAMVNG SSWPTRAVVC FDIRSEMFNF MEVYRELSYT TTLINYNNGK LGMLMGQEAH
301: KTISGICRSF ELWVLEDTVK HEWSKHVYLL PPLWKDAVAN TRLYFAGMIG TSEIVLFRPD EPLCVFYYNI DRNTIKRVGI RGLEAFKYFR IFLNHVENVK
401: LF

Arabidopsis Description

Putative F-box protein At3g23960 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIR1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.