CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52272	Canola	cytosol	4.33	77.27
CDY19134	Canola	mitochondrion	74.55	76.7
CDY15333	Canola	mitochondrion	73.28	75.0
CDY15332	Canola	cytosol	62.09	62.56
CDY15359	Canola	cytosol, plastid	63.1	62.31
CDY60961	Canola	cytosol	62.09	61.46
CDY15336	Canola	plastid	60.31	60.46
CDY15324	Canola	cytosol	58.27	59.79
CDY15352	Canola	mitochondrion	60.81	59.16
CDY18160	Canola	cytosol	26.72	58.99
CDY19137	Canola	cytosol, mitochondrion, plastid	60.81	58.87
CDY15326	Canola	cytosol	18.83	57.81
CDY60959	Canola	cytosol, mitochondrion, plastid	39.95	56.68
CDY15327	Canola	cytosol	53.94	55.06
CDX97551	Canola	mitochondrion	54.71	54.85
CDY51358	Canola	cytosol	51.91	53.97
CDY60955	Canola	cytosol, extracellular, plastid, vacuole	41.22	52.77
CDY52273	Canola	cytosol, plastid	38.17	50.34
CDX97874	Canola	extracellular	32.82	48.13
CDY15357	Canola	cytosol, nucleus, plastid	6.36	45.45
CDY15358	Canola	cytosol, extracellular, plastid	15.78	44.29
CDY46037	Canola	extracellular	15.27	44.12
CDY70182	Canola	extracellular	15.27	44.12
AT3G23960.1	Thale cress	cytosol	44.27	43.28
CDY42089	Canola	cytosol	43.51	41.91
CDY71858	Canola	cytosol, mitochondrion, nucleus, plastid	13.23	41.27
CDY12239	Canola	mitochondrion	29.26	41.22
CDX79454	Canola	cytosol	31.04	40.53
CDY65288	Canola	mitochondrion	28.24	40.22
CDY19131	Canola	mitochondrion	59.8	39.5
CDY42092	Canola	cytosol	13.99	39.01
CDY12627	Canola	cytosol	39.44	38.94
CDX70134	Canola	cytosol	38.93	38.83
CDY66546	Canola	cytosol	24.68	38.8
CDY67066	Canola	cytosol, mitochondrion, nucleus, peroxisome	39.95	38.77
CDX98860	Canola	cytosol	39.69	38.61
CDY67625	Canola	mitochondrion	25.19	38.52
CDY19088	Canola	cytosol	39.19	38.02
CDY12626	Canola	cytosol	35.88	37.7
CDY15344	Canola	mitochondrion	33.08	37.57
CDY72470	Canola	golgi, nucleus, plasma membrane	37.15	37.53
CDY66545	Canola	cytosol, peroxisome, plastid	34.35	36.78
CDY67859	Canola	cytosol, mitochondrion	35.37	36.77
CDY29772	Canola	cytosol	37.91	36.52
CDY42088	Canola	cytosol	37.91	36.43
CDY65287	Canola	cytosol	8.91	36.08
CDY29771	Canola	cytosol, plastid	30.53	36.04
CDY31173	Canola	cytosol, mitochondrion	34.86	34.42
CDY15353	Canola	cytosol	45.04	34.37
CDY42091	Canola	mitochondrion	26.97	34.3
CDY72410	Canola	cytosol	32.32	34.23
CDX83262	Canola	cytosol, mitochondrion	34.61	34.17
CDY00206	Canola	nucleus	15.52	33.7
CDY30661	Canola	cytosol	19.59	33.19
CDY70684	Canola	cytosol	17.3	33.17
CDY05937	Canola	cytosol	28.5	33.14
CDY08137	Canola	cytosol	34.35	33.09
CDY30662	Canola	extracellular, mitochondrion	11.45	32.61
CDX79453	Canola	plastid	31.3	32.37
CDY08136	Canola	cytosol	32.82	31.85
CDY10678	Canola	cytosol	31.04	31.61
CDY29942	Canola	cytosol	22.9	30.3
CDY08200	Canola	cytosol, golgi, mitochondrion, plasma membrane	33.84	30.09
CDY19127	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	40.46	27.65
CDY12259	Canola	cytosol	22.39	27.16
CDY12260	Canola	cytosol	21.88	26.96
CDY26564	Canola	mitochondrion	22.14	19.0
CDY15999	Canola	cytosol, mitochondrion	25.45	15.53
CDY15342	Canola	cytosol	7.63	13.16

Protein Annotations

Gene3D:1.20.1280.50	MapMan:35.1	UniProt:A0A078G2A6	EnsemblPlants:CDY19132	ProteinID:CDY19132	ProteinID:CDY19132.1
InterPro:F-box-assoc_dom_typ3	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00006413001	InterPro:IPR001810	PFAM:PF00646	PFAM:PF08268	PFscan:PS50181
PANTHER:PTHR31790	PANTHER:PTHR31790:SF10	SMART:SM00256	SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI0004EE89BB
SEG:seg	:	:	:	:	:

Description

BnaA04g18720DBnaA04g18720D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G2A6]

Coordinates

chrLK032092:-:421735..423093

Molecular Weight (calculated)

44612.4 Da

IEP (calculated)

9.951

GRAVY (calculated)

-0.103

Length

393 amino acids

Sequence
(BLAST)

001: MKRQKKAGLT VSQRVTRSTT RLDRNSLTLP VEVVTEIFLR LPLTSIATCR CVCKLWSSVL RSQGFTDSFL TKSCARPRLL FACHNHNETH FLLSSQLNHP
101: KHNSYVVATN HIARSPRYYK LFGCTNGFFC YGAKQGRNKA VIVTVICNPS TGQSLILPRL NSKDKYRVES YLGYDPIAKQ FKVLSVCDDG KEHHVLTLGT
201: KKQSWRLVEC CIPHCSSSKW ISISGVLYYI AAEPRSSSRE SMVVCFDLRS EKFSSVKLLG GFSKALPLSA TMINYNGRLA LLMSSEDTCY VFRTCKRFKL
301: WVLRDAAKHE WSKRVYVLPP SWNDLVTGPM YIAGMVGTKE IVFSPHCQIV PSYVIYFNVK SKTIRKVGIQ GMEAFQGEMI NTYLNYVENV ELL

Best Arabidopsis Sequence Match ( AT1G53790.1 )
(BLAST)

001: MVRDIVDDPL DEDDIALVKT YGLVPYSAPI KKVEKEIKEL TEKINDLCGI KESDTGLAPL SKQMMQEGQP LQVGYVSCFR YIPIDLLMDI FSRVPAKSIA
101: RFRCVSKLWE SILCRPDFKE LFMTMSSIRP PLLLFTFQDD DGNLFFFSSP HPQIPCNENT SLVPTRYHVQ HTTDSFSEIG SPLCGFICRR GKRNLDTMVI
201: CNPVTGESVS LPKVELKSIN TETRPYLGYD PVRKQLKVLC IKSDDIPNTC DEHQVLTLEN GNHLWRTIQC KPHYPKSDGI CIDGILYYTA GFDMRARVSM
301: VVCFDVRSEK FSFINIHVFM LMNDSCTLIN YKGKLGALQF TCLSPKRLRF WVLVNAEKNI WTKCIYALPP LWNNLVQHTE LAIVGMTDGG EVVLSQYCLI
401: YAFYIYYFNL ESKSLTRVQI QDVEMFKRTR VYTSLGYVEN FKLM

Arabidopsis Description

F-box and associated interaction domains-containing protein [Source:UniProtKB/TrEMBL;Acc:B3H7F2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.