CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52272	Canola	cytosol	4.16	72.73
CDY15358	Canola	cytosol, extracellular, plastid	24.94	68.57
CDY15326	Canola	cytosol	22.34	67.19
CDY60955	Canola	cytosol, extracellular, plastid, vacuole	53.51	67.1
CDY15324	Canola	cytosol	63.12	63.45
CDY15332	Canola	cytosol	64.16	63.33
CDY15336	Canola	plastid	64.42	63.27
CDY15352	Canola	mitochondrion	64.16	61.14
CDY19137	Canola	cytosol, mitochondrion, plastid	63.64	60.34
CDY15359	Canola	cytosol, plastid	61.04	59.05
CDY19134	Canola	mitochondrion	58.18	58.64
CDY15333	Canola	mitochondrion	57.92	58.07
CDY60961	Canola	cytosol	59.74	57.93
CDY18160	Canola	cytosol	26.75	57.87
CDY51358	Canola	cytosol	56.1	57.14
CDX97551	Canola	mitochondrion	57.92	56.89
CDX97874	Canola	extracellular	38.18	54.85
CDY52273	Canola	cytosol, plastid	42.34	54.7
CDY19132	Canola	mitochondrion	55.06	53.94
CDY60959	Canola	cytosol, mitochondrion, plastid	38.7	53.79
CDY15357	Canola	cytosol, nucleus, plastid	7.53	52.73
CDY71858	Canola	cytosol, mitochondrion, nucleus, plastid	15.58	47.62
CDY70182	Canola	extracellular	15.32	43.38
CDY46037	Canola	extracellular	15.32	43.38
CDX79454	Canola	cytosol	33.77	43.19
CDY12239	Canola	mitochondrion	30.65	42.29
AT3G23960.1	Thale cress	cytosol	43.9	42.04
CDY42089	Canola	cytosol	43.9	41.42
CDY42091	Canola	mitochondrion	32.73	40.78
CDY65288	Canola	mitochondrion	29.09	40.58
CDY67066	Canola	cytosol, mitochondrion, nucleus, peroxisome	42.34	40.25
CDY19088	Canola	cytosol	42.34	40.25
CDY29771	Canola	cytosol, plastid	34.81	40.24
CDY67625	Canola	mitochondrion	26.75	40.08
CDY15344	Canola	mitochondrion	35.84	39.88
CDY12627	Canola	cytosol	41.04	39.7
CDX98860	Canola	cytosol	41.56	39.6
CDY15353	Canola	cytosol	52.73	39.42
CDY19131	Canola	mitochondrion	60.78	39.33
CDX70134	Canola	cytosol	40.0	39.09
CDY72470	Canola	golgi, nucleus, plasma membrane	39.48	39.07
CDY42092	Canola	cytosol	14.29	39.01
CDY66546	Canola	cytosol	25.19	38.8
CDY00206	Canola	nucleus	17.92	38.12
CDY12626	Canola	cytosol	36.88	37.97
CDY66545	Canola	cytosol, peroxisome, plastid	35.58	37.33
CDY42088	Canola	cytosol	39.48	37.16
CDY70684	Canola	cytosol	19.48	36.59
CDY67859	Canola	cytosol, mitochondrion	35.84	36.51
CDY30662	Canola	extracellular, mitochondrion	12.73	35.51
CDY05937	Canola	cytosol	30.91	35.21
CDY31173	Canola	cytosol, mitochondrion	36.36	35.18
CDY08137	Canola	cytosol	36.88	34.8
CDY29772	Canola	cytosol	36.62	34.56
CDX83262	Canola	cytosol, mitochondrion	35.58	34.42
CDX79453	Canola	plastid	33.77	34.21
CDY08136	Canola	cytosol	35.84	34.07
CDY65287	Canola	cytosol	8.57	34.02
CDY72410	Canola	cytosol	32.47	33.69
CDY10678	Canola	cytosol	33.51	33.42
CDY30661	Canola	cytosol	20.0	33.19
CDY08200	Canola	cytosol, golgi, mitochondrion, plasma membrane	35.84	31.22
CDY29942	Canola	cytosol	23.9	30.98
CDY19127	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	41.3	27.65
CDY12260	Canola	cytosol	21.56	26.02
CDY12259	Canola	cytosol	21.82	25.93
CDY26564	Canola	mitochondrion	23.9	20.09
CDY15999	Canola	cytosol, mitochondrion	26.23	15.68
CDY15342	Canola	cytosol	8.83	14.91

Protein Annotations

EnsemblPlants:CDY15327	EnsemblPlantsGene:GSBRNA2T00085606001	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-assoc_dom_typ3	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR31790
PANTHER:PTHR31790:SF47	PFAM:PF00646	PFAM:PF08268	ProteinID:CDY15327	ProteinID:CDY15327.1	SMART:SM00256
SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI0004EEB41B	UniProt:A0A078FR36	MapMan:35.1	:

Description

BnaC04g42960DBnaC04g42960D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FR36]

Coordinates

chrLK032054:+:64651..65808

Molecular Weight (calculated)

44254.4 Da

IEP (calculated)

9.148

GRAVY (calculated)

-0.106

Length

385 amino acids

Sequence
(BLAST)

001: MNVSVLTFSP HLERSSLPIP DDLVFEIFSR LPSKAIARCC CISKFWASML RSQDFTELFL TKSFAHPQLL FVFKEDREIV FFSSPQPENP EENSYVVAAN
101: HLARFPGREF SYTTGFLCYG VNLIRNCEFE KVICNPSTGQ ALTLPRLNSR LRVGMDSYLG YDSIAKEFKL LSMNSSRVTD RWISKEHQVL TLGTKNSSWR
201: LVECCIPHYT SRKWLCISGV LYYAASVNSS SLNSMVACFD LRSEKFSFVK FMETFSRTMH HSTTLVNYDG KLGLIMSRSS RHVSQANKSL ELWVLRDGAK
301: HEWSKHVYVL PPSWKDVVTE TMRIIGMVGT SEIVLSPSFQ YVPSYIIYFN VESKRIRKVG IQGLEAFQGK RSYTYLNYVE NVKFI

Best Arabidopsis Sequence Match ( AT1G53790.1 )
(BLAST)

001: MVRDIVDDPL DEDDIALVKT YGLVPYSAPI KKVEKEIKEL TEKINDLCGI KESDTGLAPL SKQMMQEGQP LQVGYVSCFR YIPIDLLMDI FSRVPAKSIA
101: RFRCVSKLWE SILCRPDFKE LFMTMSSIRP PLLLFTFQDD DGNLFFFSSP HPQIPCNENT SLVPTRYHVQ HTTDSFSEIG SPLCGFICRR GKRNLDTMVI
201: CNPVTGESVS LPKVELKSIN TETRPYLGYD PVRKQLKVLC IKSDDIPNTC DEHQVLTLEN GNHLWRTIQC KPHYPKSDGI CIDGILYYTA GFDMRARVSM
301: VVCFDVRSEK FSFINIHVFM LMNDSCTLIN YKGKLGALQF TCLSPKRLRF WVLVNAEKNI WTKCIYALPP LWNNLVQHTE LAIVGMTDGG EVVLSQYCLI
401: YAFYIYYFNL ESKSLTRVQI QDVEMFKRTR VYTSLGYVEN FKLM

Arabidopsis Description

F-box and associated interaction domains-containing protein [Source:UniProtKB/TrEMBL;Acc:B3H7F2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.