CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, golgi, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY19134	Canola	mitochondrion	90.1	90.58
CDY52272	Canola	cytosol	4.43	77.27
CDY19132	Canola	mitochondrion	75.0	73.28
CDY15359	Canola	cytosol, plastid	67.45	65.08
CDY60961	Canola	cytosol	65.36	63.22
CDY15332	Canola	cytosol	63.54	62.56
CDY15336	Canola	plastid	63.28	61.99
CDY15326	Canola	cytosol	20.57	61.72
CDY15324	Canola	cytosol	61.2	61.36
CDY15352	Canola	mitochondrion	63.8	60.64
CDY19137	Canola	cytosol, mitochondrion, plastid	61.46	58.13
CDY15327	Canola	cytosol	58.07	57.92
CDX97551	Canola	mitochondrion	59.11	57.91
CDY60955	Canola	cytosol, extracellular, plastid, vacuole	46.09	57.65
CDY60959	Canola	cytosol, mitochondrion, plastid	41.41	57.4
CDY18160	Canola	cytosol	26.56	57.3
CDY51358	Canola	cytosol	54.17	55.03
CDY15358	Canola	cytosol, extracellular, plastid	19.79	54.29
CDY52273	Canola	cytosol, plastid	41.67	53.69
CDY15357	Canola	cytosol, nucleus, plastid	7.29	50.91
CDY71858	Canola	cytosol, mitochondrion, nucleus, plastid	16.15	49.21
CDX97874	Canola	extracellular	34.11	48.88
CDY70182	Canola	extracellular	16.93	47.79
CDY46037	Canola	extracellular	16.93	47.79
CDY12239	Canola	mitochondrion	31.77	43.73
AT3G23960.1	Thale cress	cytosol	45.31	43.28
CDX79454	Canola	cytosol	32.81	41.86
CDY67066	Canola	cytosol, mitochondrion, nucleus, peroxisome	43.75	41.48
CDY19088	Canola	cytosol	43.23	40.99
CDY42089	Canola	cytosol	42.97	40.44
CDY19131	Canola	mitochondrion	62.24	40.17
CDY42092	Canola	cytosol	14.58	39.72
CDX98860	Canola	cytosol	41.41	39.36
CDY67625	Canola	mitochondrion	26.3	39.3
CDX70134	Canola	cytosol	40.1	39.09
CDY12626	Canola	cytosol	37.5	38.5
CDY12627	Canola	cytosol	39.58	38.19
CDY15344	Canola	mitochondrion	33.85	37.57
CDY67859	Canola	cytosol, mitochondrion	36.98	37.57
CDY29771	Canola	cytosol, plastid	32.55	37.54
CDY65288	Canola	mitochondrion	26.82	37.32
CDY66546	Canola	cytosol	23.96	36.8
CDY72470	Canola	golgi, nucleus, plasma membrane	36.98	36.5
CDY00206	Canola	nucleus	17.19	36.46
CDY42088	Canola	cytosol	38.8	36.43
CDY15353	Canola	cytosol	47.92	35.73
CDY29772	Canola	cytosol	37.5	35.29
CDY42091	Canola	mitochondrion	28.39	35.28
CDY65287	Canola	cytosol	8.85	35.05
CDY66545	Canola	cytosol, peroxisome, plastid	33.33	34.88
CDY30662	Canola	extracellular, mitochondrion	12.5	34.78
CDY70684	Canola	cytosol	18.49	34.63
CDY31173	Canola	cytosol, mitochondrion	35.68	34.42
CDY72410	Canola	cytosol	32.29	33.42
CDX83262	Canola	cytosol, mitochondrion	34.64	33.42
CDX79453	Canola	plastid	32.81	33.16
CDY08137	Canola	cytosol	35.16	33.09
CDY05937	Canola	cytosol	28.91	32.84
CDY30661	Canola	cytosol	19.79	32.76
CDY10678	Canola	cytosol	32.55	32.38
CDY08136	Canola	cytosol	33.59	31.85
CDY29942	Canola	cytosol	23.7	30.64
CDY08200	Canola	cytosol, golgi, mitochondrion, plasma membrane	34.9	30.32
CDY12260	Canola	cytosol	22.4	26.96
CDY12259	Canola	cytosol	22.66	26.85
CDY19127	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	40.1	26.78
CDY26564	Canola	mitochondrion	23.18	19.43
CDY15999	Canola	cytosol, mitochondrion	25.52	15.22
CDY15342	Canola	cytosol	7.03	11.84

Protein Annotations

Gene3D:1.20.1280.50	MapMan:35.1	UniProt:A0A078FSQ1	EnsemblPlants:CDY15333	ProteinID:CDY15333	ProteinID:CDY15333.1
InterPro:F-box-assoc_dom_typ3	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00085615001	InterPro:IPR001810	PFAM:PF08268	PFAM:PF12937	PFscan:PS50181
PANTHER:PTHR31790	PANTHER:PTHR31790:SF10	SMART:SM00256	SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI0004EEA50D

Description

BnaC04g42900DBnaC04g42900D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FSQ1]

Coordinates

chrLK032054:+:102598..103996

Molecular Weight (calculated)

43894.5 Da

IEP (calculated)

9.589

GRAVY (calculated)

-0.072

Length

384 amino acids

Sequence
(BLAST)

001: MKGGRRVTRS TTRLDRNSLT LPVEVVIEIF LRLQLNSLAR CRCVCKLWSS VLRSQGFTDS FLTKSCARPQ LLFACSDYRR EIHFLSSPQP ENPEDNSHVV
101: AANHLARFPT SYCFFGCTNG FFCYGANQGK NKPVLVTVIC NPSTGQSLTL PRLNSKERYR VESYLGYDPV AKEFKVLSVC DGKEFHVLTL GTKKLSWRVV
201: ECCIPHYSSR KWICISGVLY YIAAEPRSSS GESMVVCFDL GTEKFSFVNL LRLKRALPQS TTLVNYNDRL GLLMSSEDTC YVFRSCKRFK LWVLRDAAKH
301: EWSKHVFILP PLWKDVVVDR MCIAGIAGVN EIVLAPWFQY VPSYVIYYNV KSKTIRKVGI QGMEALQGRR LNTYLNYVEN VKLL

Best Arabidopsis Sequence Match ( AT2G31470.1 )
(BLAST)

001: MKSRRQNVSV ARQTILGRDE NFEPIPIDLV IEIFSRSPVK SIARCRCVSK LWASILRLPY FTELYLTKSC ARPRLLFACQ KHRELFFFST PQPHNPNESS
101: SPLAASFHMK IPFDGRFNII SPIGGLVFVR YEQILKGRKT PEFVSAICNP STGQSLTLPK PKTRKRIWGT SHFGYDPIEK QFKVLSMNIG DGVYKEHYVL
201: TLGTENLSWR RIECSIPHVH GSKGICINGV LYYRAKADMF SGTLMIVCFD VRFEKFSYIK ILKPTTTLIS YNGKLASLVW EGPSYICGKR FEMWVLGDPE
301: KHEWLKHTYE LRPRWQNVLG EDLLIFAGMT GTNEIVLSPK YPSHPFYVFY YNLERNTIRR VEIQGMGAFK VNEDYIFLDH VEDVKLI

Arabidopsis Description

DORF-box protein DOR [Source:UniProtKB/Swiss-Prot;Acc:Q5BPS3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.