CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15326	Canola	cytosol	26.28	80.47
CDY15332	Canola	cytosol	73.98	74.36
CDY15352	Canola	mitochondrion	74.23	72.03
CDY15324	Canola	cytosol	69.64	71.28
CDY19137	Canola	cytosol, mitochondrion, plastid	72.96	70.44
CDY60959	Canola	cytosol, mitochondrion, plastid	48.47	68.59
CDY52272	Canola	cytosol	3.83	68.18
CDY60961	Canola	cytosol	68.11	67.25
CDY15359	Canola	cytosol, plastid	67.35	66.33
CDY60955	Canola	cytosol, extracellular, plastid, vacuole	51.79	66.12
CDY19134	Canola	mitochondrion	63.52	65.18
CDY15327	Canola	cytosol	63.27	64.42
CDY15333	Canola	mitochondrion	61.99	63.28
CDX97551	Canola	mitochondrion	63.27	63.27
CDY51358	Canola	cytosol	58.93	61.11
CDY19132	Canola	mitochondrion	60.46	60.31
CDY52273	Canola	cytosol, plastid	45.41	59.73
CDY18160	Canola	cytosol	27.04	59.55
CDY15357	Canola	cytosol, nucleus, plastid	7.91	56.36
CDY71858	Canola	cytosol, mitochondrion, nucleus, plastid	18.11	56.35
CDY15358	Canola	cytosol, extracellular, plastid	19.9	55.71
CDY19131	Canola	mitochondrion	84.18	55.46
CDX97874	Canola	extracellular	36.99	54.1
AT3G23960.1	Thale cress	cytosol	47.96	46.77
CDY70182	Canola	extracellular	16.07	46.32
CDY46037	Canola	extracellular	16.07	46.32
CDX79454	Canola	cytosol	34.69	45.18
CDY12239	Canola	mitochondrion	31.63	44.44
CDY65288	Canola	mitochondrion	30.87	43.84
CDY42089	Canola	cytosol	44.9	43.14
CDY19088	Canola	cytosol	44.39	42.96
CDY67066	Canola	cytosol, mitochondrion, nucleus, peroxisome	43.88	42.47
CDY66546	Canola	cytosol	26.79	42.0
CDY15344	Canola	mitochondrion	36.48	41.33
CDY29771	Canola	cytosol, plastid	34.95	41.14
CDY42092	Canola	cytosol	14.8	41.13
CDX98860	Canola	cytosol	42.09	40.84
CDY42091	Canola	mitochondrion	31.89	40.45
CDY67625	Canola	mitochondrion	26.28	40.08
CDX70134	Canola	cytosol	40.05	39.85
CDY66545	Canola	cytosol, peroxisome, plastid	36.99	39.51
CDY12626	Canola	cytosol	36.99	38.77
CDY12627	Canola	cytosol	39.29	38.69
CDY72470	Canola	golgi, nucleus, plasma membrane	38.27	38.56
CDY70684	Canola	cytosol	19.9	38.05
CDY67859	Canola	cytosol, mitochondrion	36.48	37.83
CDY15353	Canola	cytosol	49.49	37.67
CDY42088	Canola	cytosol	39.03	37.41
CDY31173	Canola	cytosol, mitochondrion	37.76	37.19
CDY65287	Canola	cytosol	9.18	37.11
CDX83262	Canola	cytosol, mitochondrion	36.73	36.18
CDY29772	Canola	cytosol	37.24	35.78
CDY30662	Canola	extracellular, mitochondrion	12.5	35.51
CDY00206	Canola	nucleus	16.33	35.36
CDY08137	Canola	cytosol	36.73	35.29
CDY05937	Canola	cytosol	29.85	34.62
CDY08136	Canola	cytosol	35.2	34.07
CDY72410	Canola	cytosol	31.89	33.69
CDY30661	Canola	cytosol	19.9	33.62
CDX79453	Canola	plastid	32.4	33.42
CDY29942	Canola	cytosol	24.74	32.66
CDY10678	Canola	cytosol	31.63	32.12
CDY08200	Canola	cytosol, golgi, mitochondrion, plasma membrane	35.46	31.45
CDY19127	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	43.62	29.74
CDY12259	Canola	cytosol	22.96	27.78
CDY12260	Canola	cytosol	22.45	27.59
CDY26564	Canola	mitochondrion	23.98	20.52
CDY15999	Canola	cytosol, mitochondrion	26.79	16.3
CDY15342	Canola	cytosol	6.89	11.84

Protein Annotations

EnsemblPlants:CDY15336	EnsemblPlantsGene:GSBRNA2T00085618001	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-assoc_dom_typ3	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR31790
PANTHER:PTHR31790:SF47	PFAM:PF00646	PFAM:PF08268	ProteinID:CDY15336	ProteinID:CDY15336.1	SMART:SM00256
SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI0004EECD31	UniProt:A0A078FQ86	MapMan:35.1	:

Description

BnaC04g42870DBnaC04g42870D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FQ86]

Coordinates

chrLK032054:+:111552..112730

Molecular Weight (calculated)

44170.7 Da

IEP (calculated)

9.207

GRAVY (calculated)

-0.047

Length

392 amino acids

Sequence
(BLAST)

001: MTSRRATRSM ASLHGNSLPV PDELAMEIFS RLPSKAMARC RCACKLWSSM LRRQDFTELF LTKSCARPQL LFACEDRSVS KYIFISSPQP ENPEENSYVV
101: ASNNLACFPR SYELFGCTNG FLCYGAKPIL EGRINPAYVP VICNPSTGQS LILPTLKSRM RFGIESYLGY EPIAKEFKAL SMESSYVSGH SVRHQVLTLG
201: TKKLTWRLVE CCVPHSSSRK WICIRGVLYY TAAANSSSVK SMVVCFDLRT EKFSFVKFME TSSKAMPGST TLVNYDGKLG LLMSGDSHAV TRATTSFELW
301: VLLDAGKHEW SNHVYVLPPS WEDVVSRNMR IAGMVGVNEI VLAPWFQRVP SYVIYFNVER KTITKVGIQG PEAFMGKMFY TYLNHVENVK LL

Best Arabidopsis Sequence Match ( AT3G23960.1 )
(BLAST)

001: MRSRQLHNVS EDRETLSRRN KRSKTSLNGH IPIDLLIEIF LKLPVKSIAT CRSVSKFWTY VLGRQDFTEL FLTKSSSRPQ LLFACANDNG YFFFSSNQPQ
101: NLDENSSPIA AYPLTHVPKS RDLGPPINGL VSLRGERILK GRIRPVDVSI IYNPSTGESL TLPKTNMTRK KIYTVTSFLG YDPIEKQYKV LSMNMSYEKH
201: PKCEGYQVLT LGTGKLSWRM IKCCLNYQHP LKNSEICING VLYYLAMVNG SSWPTRAVVC FDIRSEMFNF MEVYRELSYT TTLINYNNGK LGMLMGQEAH
301: KTISGICRSF ELWVLEDTVK HEWSKHVYLL PPLWKDAVAN TRLYFAGMIG TSEIVLFRPD EPLCVFYYNI DRNTIKRVGI RGLEAFKYFR IFLNHVENVK
401: LF

Arabidopsis Description

Putative F-box protein At3g23960 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIR1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.