CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra021767.1-P	Field mustard	cytosol	100.0	100.0
CDY15359	Canola	cytosol, plastid	95.47	95.23
CDY52272	Canola	cytosol	3.78	68.18
CDY15336	Canola	plastid	67.25	68.11
CDY19134	Canola	mitochondrion	64.48	67.02
CDY15332	Canola	cytosol	65.74	66.92
CDY15333	Canola	mitochondrion	63.22	65.36
CDY15324	Canola	cytosol	61.21	63.45
CDY15326	Canola	cytosol	20.4	63.28
CDY15352	Canola	mitochondrion	63.22	62.13
CDY19132	Canola	mitochondrion	61.46	62.09
CDY60959	Canola	cytosol, mitochondrion, plastid	43.07	61.73
CDY19137	Canola	cytosol, mitochondrion, plastid	62.97	61.58
CDY60955	Canola	cytosol, extracellular, plastid, vacuole	47.1	60.91
CDY15327	Canola	cytosol	57.93	59.74
CDX97551	Canola	mitochondrion	58.44	59.18
CDY15357	Canola	cytosol, nucleus, plastid	8.06	58.18
CDY52273	Canola	cytosol, plastid	41.81	55.7
CDY18160	Canola	cytosol	24.94	55.62
CDY51358	Canola	cytosol	52.9	55.56
CDY15358	Canola	cytosol, extracellular, plastid	18.89	53.57
CDY71858	Canola	cytosol, mitochondrion, nucleus, plastid	15.62	49.21
CDX97874	Canola	extracellular	31.99	47.39
CDX79454	Canola	cytosol	34.76	45.85
AT3G23960.1	Thale cress	cytosol	46.35	45.77
CDY70182	Canola	extracellular	15.62	45.59
CDY46037	Canola	extracellular	15.62	45.59
CDY65287	Canola	cytosol	11.08	45.36
CDY42089	Canola	cytosol	46.1	44.85
CDY66546	Canola	cytosol	28.21	44.8
CDY19131	Canola	mitochondrion	65.74	43.87
CDY12239	Canola	mitochondrion	30.48	43.37
CDY65288	Canola	mitochondrion	29.22	42.03
CDX98860	Canola	cytosol	42.57	41.83
CDY15344	Canola	mitochondrion	36.02	41.33
CDX70134	Canola	cytosol	40.55	40.86
CDY12627	Canola	cytosol	40.81	40.7
CDY72470	Canola	golgi, nucleus, plasma membrane	39.55	40.36
CDY29771	Canola	cytosol, plastid	33.75	40.24
CDY12626	Canola	cytosol	37.78	40.11
CDY42091	Canola	mitochondrion	30.98	39.81
CDY66545	Canola	cytosol, peroxisome, plastid	36.78	39.78
CDY19088	Canola	cytosol	40.55	39.75
CDY67066	Canola	cytosol, mitochondrion, nucleus, peroxisome	40.55	39.75
CDY42092	Canola	cytosol	14.11	39.72
CDY42088	Canola	cytosol	40.81	39.61
CDY67859	Canola	cytosol, mitochondrion	36.78	38.62
CDY67625	Canola	mitochondrion	24.94	38.52
CDY31173	Canola	cytosol, mitochondrion	38.04	37.94
CDY08137	Canola	cytosol	38.54	37.5
CDX83262	Canola	cytosol, mitochondrion	37.53	37.44
CDY29772	Canola	cytosol	38.29	37.25
CDX79453	Canola	plastid	35.26	36.84
CDY30661	Canola	cytosol	20.91	35.78
CDY72410	Canola	cytosol	33.25	35.58
CDY15353	Canola	cytosol	46.1	35.53
CDY70684	Canola	cytosol	18.14	35.12
CDY05937	Canola	cytosol	29.72	34.91
CDY08136	Canola	cytosol	34.76	34.07
CDY30662	Canola	extracellular, mitochondrion	11.59	33.33
CDY00206	Canola	nucleus	15.11	33.15
CDY10678	Canola	cytosol	31.74	32.64
CDY08200	Canola	cytosol, golgi, mitochondrion, plasma membrane	35.26	31.67
CDY29942	Canola	cytosol	23.43	31.31
CDY19127	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	44.58	30.78
CDY12260	Canola	cytosol	23.17	28.84
CDY12259	Canola	cytosol	23.43	28.7
CDY26564	Canola	mitochondrion	22.92	19.87
CDY15999	Canola	cytosol, mitochondrion	25.69	15.84
CDY15342	Canola	cytosol	6.55	11.4

Protein Annotations

Gene3D:1.20.1280.50	MapMan:35.1	UniProt:A0A078J9Y2	EnsemblPlants:CDY60961	ProteinID:CDY60961	ProteinID:CDY60961.1
InterPro:F-box-assoc_dom_typ3	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00030327001	InterPro:IPR001810	PFAM:PF00646	PFAM:PF08268	PFscan:PS50181
PANTHER:PTHR31790	PANTHER:PTHR31790:SF47	SMART:SM00256	SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI0002544F0C

Description

BnaA04g28900DBnaA04g28900D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J9Y2]

Coordinates

chrLK033937:-:13286..14479

Molecular Weight (calculated)

45293.9 Da

IEP (calculated)

8.855

GRAVY (calculated)

-0.073

Length

397 amino acids

Sequence
(BLAST)

001: MKERKQNDSE NGVKITRRIT RSMATHHRNS LTLPVEVVTE IFSRLPSKSI ARCRCVCKLW SSMLRRQDFT ELFLTKSCAH PRLLFACEDD NEQFLFFSSP
101: QPHNPEENSH VVAVNNLACF PSSYQLFGCT SGFLCYGANL ILKARKKRAY VTVICNPSTG QSLILPTLKS SKTSGIESYL GYDPVSKEFK VLSVRYDGWI
201: SKELHVLTLG TKKLSWRLVE CCVPHSTSRK WICISGVLYY IARTSEAYYM VVCFDLRTEK FSFVKFSRAL PGSATLINYN GRLGLLRSLE DFGNISRASK
301: SIELWVLGDA AKNEWSEHVY MLPDFWKDVV AESMCIAGMV GTHEIVLSPC YQYVPSYVIY FNVERKTIRI VGIQGMEAFQ GNICYTYLNY VENVKLL

Best Arabidopsis Sequence Match ( AT5G65850.1 )
(BLAST)

001: MRTLRRNVTE NRLTISRRRT EKKTSPNKTE KSVQIPVDII IEILLRLPAK SIATCRCVSK LWISVICRQD FTELFLTRSL HRPQLLFCCK KDGNLFFFSS
101: PQLQNPYENS SAISLKNFSL CYKISRPVNG LICFKRKEMN ETVTVICNPS TGHTLSLPKP MKTSIGPSRF FVYEPIQKQF KVLLSYKSDE HQVLTLGTGE
201: LSWRIIECSM PHILGMSEIC INGVLYYPAI NLSSGDYIIV CFDVRSEKFR FITVMEEFIK AAHDGTLINY NGKLASLVSE RYCFVDGRSK SIELWVLQDA
301: EKKEWSKHTY VLPAWWQHRI GTLNLRFVGV TRTNEIMLSP CYQTVPFDVY YFNIERKTMM SVAIQGMEAF QGHLVFTYLD HVENVKLLHN MF

Arabidopsis Description

F-box protein At5g65850 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHP3]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.