CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular, cytosol

Predictor Summary:

nucleus 1
cytosol 1
plastid 2
extracellular 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, plastid
Any Predictor:	cytosol, extracellular, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	plastid
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71858	Canola	cytosol, mitochondrion, nucleus, plastid	39.29	43.65
CDY65287	Canola	cytosol	25.71	37.11
CDY00206	Canola	nucleus	38.57	29.83
CDY60955	Canola	cytosol, extracellular, plastid, vacuole	60.0	27.36
CDY60959	Canola	cytosol, mitochondrion, plastid	53.57	27.08
CDY15327	Canola	cytosol	68.57	24.94
CDY66546	Canola	cytosol	37.86	21.2
CDY15332	Canola	cytosol	56.43	20.26
CDY15336	Canola	plastid	55.71	19.9
CDY15324	Canola	cytosol	54.29	19.84
CDY15333	Canola	mitochondrion	54.29	19.79
CDY19137	Canola	cytosol, mitochondrion, plastid	57.14	19.7
CDY30661	Canola	cytosol	32.14	19.4
CDY19134	Canola	mitochondrion	52.86	19.37
CDY15352	Canola	mitochondrion	55.71	19.31
CDY15359	Canola	cytosol, plastid	54.29	19.1
CDY51358	Canola	cytosol	51.43	19.05
CDY60961	Canola	cytosol	53.57	18.89
CDY15344	Canola	mitochondrion	44.29	17.92
CDX97551	Canola	mitochondrion	49.29	17.6
CDY52273	Canola	cytosol, plastid	36.43	17.11
CDY12259	Canola	cytosol	39.29	16.98
CDY12260	Canola	cytosol	38.57	16.93
CDY19132	Canola	mitochondrion	44.29	15.78
CDY67066	Canola	cytosol, mitochondrion, nucleus, peroxisome	45.0	15.56
CDY19088	Canola	cytosol	45.0	15.56
CDY66545	Canola	cytosol, peroxisome, plastid	38.57	14.71
AT3G23960.1	Thale cress	cytosol	41.43	14.43
CDY72470	Canola	golgi, nucleus, plasma membrane	40.0	14.4
CDY29771	Canola	cytosol, plastid	33.57	14.11
CDX98860	Canola	cytosol	40.71	14.11
CDY42089	Canola	cytosol	40.0	13.73
CDY29772	Canola	cytosol	40.0	13.73
CDX79454	Canola	cytosol	29.29	13.62
CDY31173	Canola	cytosol, mitochondrion	38.57	13.57
CDY12239	Canola	mitochondrion	26.43	13.26
CDY19131	Canola	mitochondrion	55.71	13.11
CDX83262	Canola	cytosol, mitochondrion	37.14	13.07
CDX70134	Canola	cytosol	36.43	12.94
CDY42088	Canola	cytosol	37.14	12.71
CDY42091	Canola	mitochondrion	27.14	12.3
CDY10678	Canola	cytosol	32.86	11.92
CDY12627	Canola	cytosol	33.57	11.81
CDY08136	Canola	cytosol	33.57	11.6
CDX79453	Canola	plastid	31.43	11.58
CDY08137	Canola	cytosol	32.86	11.27
CDY05937	Canola	cytosol	27.14	11.24
CDY08200	Canola	cytosol, golgi, mitochondrion, plasma membrane	35.0	11.09
CDY19127	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	44.29	10.78
CDY72410	Canola	cytosol	27.86	10.51
CDY12626	Canola	cytosol	27.14	10.16
CDY67859	Canola	cytosol, mitochondrion	26.43	9.79
CDY15353	Canola	cytosol	21.43	5.83
CDY26564	Canola	mitochondrion	17.86	5.46
CDY15999	Canola	cytosol, mitochondrion	24.29	5.28
CDY65288	Canola	mitochondrion	5.71	2.9
CDY67625	Canola	mitochondrion	5.0	2.72
CDY29942	Canola	cytosol	5.0	2.36
CDX97874	Canola	extracellular	4.29	2.24
CDY46037	Canola	extracellular	2.14	2.21
CDY70182	Canola	extracellular	2.14	2.21
CDY15357	Canola	cytosol, nucleus, plastid	0.71	1.82
CDY15326	Canola	cytosol	1.43	1.56
CDY30662	Canola	extracellular, mitochondrion	0.71	0.72
CDY18160	Canola	cytosol	0.71	0.56
CDY15342	Canola	cytosol	0.71	0.44
CDY52272	Canola	cytosol	0.0	0.0
CDY42092	Canola	cytosol	0.0	0.0
CDY70684	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDY15358	EnsemblPlantsGene:GSBRNA2T00085647001	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR31790	PANTHER:PTHR31790:SF47	PFAM:PF00646
ProteinID:CDY15358	ProteinID:CDY15358.1	SMART:SM00256	SUPFAM:SSF81383	UniParc:UPI0004EDB57E	UniProt:A0A078FSS6
MapMan:35.1	:	:	:	:	:

Description

BnaC04g42650DBnaC04g42650D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FSS6]

Coordinates

chrLK032054:-:249740..250162

Molecular Weight (calculated)

15724.0 Da

IEP (calculated)

7.690

GRAVY (calculated)

0.104

Length

140 amino acids

Sequence
(BLAST)

001: MNVLTFSPPV TRSSLSIPDD LVLEIFSRLP LKAITRCRCV SKLLAPMLRS QYFTESFLIK SFARPQLLFA CKDDSKLFFF SSPQPENPEE NSYVVAANHL
101: ARFPCSDRFS APTSGFFSCY GFSLIMNCEL ENVICNPSTG

Best Arabidopsis Sequence Match ( AT2G31470.2 )
(BLAST)

001: MKSRRQNVSV ARQTILGRDE NFEPIPIDLV IEIFSRSPVK SIARCRCVSK LWASILRLPY FTELYLTKSC ARPRLLFACQ KHRELFFFST PQPHNPNESS
101: SPLAASFHMK IPFDGRFNII SPIGGLVFVR YEQILKGRKT PEFVSAICNP STGQSLTLPK PKTRKRIWGT SHFGYDPIEK QFKVLSMNIG DGVYKEHYVL
201: TLGTENLSWR RIECSIPHVH GSKGICINGV LYYRAKADMF SECTWRGLVN FCWNDWYK

Arabidopsis Description

DORF-box protein DOR [Source:UniProtKB/Swiss-Prot;Acc:Q5BPS3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.