CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 2
extracellular 2
golgi 2
plasma membrane 2
endoplasmic reticulum 2
vacuole 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15357	Canola	cytosol, nucleus, plastid	17.98	58.18
CDY15326	Canola	cytosol	41.57	57.81
CDY46037	Canola	extracellular	36.52	47.79
CDY70182	Canola	extracellular	36.52	47.79
CDY52272	Canola	cytosol	5.62	45.45
CDY42092	Canola	cytosol	29.78	37.59
CDX97874	Canola	extracellular	55.62	36.94
CDY60955	Canola	cytosol, extracellular, plastid, vacuole	55.06	31.92
CDY30662	Canola	extracellular, mitochondrion	24.16	31.16
CDY15324	Canola	cytosol	59.55	27.68
CDY19134	Canola	mitochondrion	58.43	27.23
CDY15332	Canola	cytosol	59.55	27.18
CDY15336	Canola	plastid	59.55	27.04
CDY51358	Canola	cytosol	57.3	26.98
CDY15327	Canola	cytosol	57.87	26.75
CDY19132	Canola	mitochondrion	58.99	26.72
CDY15333	Canola	mitochondrion	57.3	26.56
CDY15352	Canola	mitochondrion	57.87	25.5
CDY15359	Canola	cytosol, plastid	56.74	25.38
CDY19137	Canola	cytosol, mitochondrion, plastid	57.87	25.37
CDY70684	Canola	cytosol	29.21	25.37
CDY60961	Canola	cytosol	55.62	24.94
CDX97551	Canola	mitochondrion	54.49	24.74
CDY12239	Canola	mitochondrion	38.2	24.37
CDX79454	Canola	cytosol	41.01	24.25
CDY52273	Canola	cytosol, plastid	39.33	23.49
CDY42091	Canola	mitochondrion	39.89	22.98
CDY67625	Canola	mitochondrion	33.15	22.96
CDY65288	Canola	mitochondrion	33.71	21.74
CDY12626	Canola	cytosol	42.7	20.32
CDY12627	Canola	cytosol	43.82	19.6
CDY67859	Canola	cytosol, mitochondrion	41.57	19.58
CDY29771	Canola	cytosol, plastid	36.52	19.52
CDY19088	Canola	cytosol	43.82	19.26
CDY15353	Canola	cytosol	55.62	19.22
AT3G23960.1	Thale cress	cytosol	43.26	19.15
CDY42089	Canola	cytosol	42.7	18.63
CDY67066	Canola	cytosol, mitochondrion, nucleus, peroxisome	42.13	18.52
CDY72470	Canola	golgi, nucleus, plasma membrane	39.33	17.99
CDY29942	Canola	cytosol	28.09	16.84
CDY19131	Canola	mitochondrion	55.62	16.64
CDY42088	Canola	cytosol	38.2	16.63
CDX70134	Canola	cytosol	35.96	16.24
CDY72410	Canola	cytosol	33.71	16.17
CDY29772	Canola	cytosol	36.52	15.93
CDX98860	Canola	cytosol	35.96	15.84
CDY08137	Canola	cytosol	34.83	15.2
CDY60959	Canola	cytosol, mitochondrion, plastid	23.6	15.16
CDY08136	Canola	cytosol	34.27	15.06
CDY05937	Canola	cytosol	28.09	14.79
CDY08200	Canola	cytosol, golgi, mitochondrion, plasma membrane	34.83	14.03
CDY15344	Canola	mitochondrion	26.97	13.87
CDY31173	Canola	cytosol, mitochondrion	30.9	13.82
CDX83262	Canola	cytosol, mitochondrion	30.9	13.82
CDY66545	Canola	cytosol, peroxisome, plastid	27.53	13.35
CDY19127	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	37.64	11.65
CDX79453	Canola	plastid	24.72	11.58
CDY10678	Canola	cytosol	24.72	11.4
CDY26564	Canola	mitochondrion	22.47	8.73
CDY66546	Canola	cytosol	11.24	8.0
CDY15342	Canola	cytosol	8.99	7.02
CDY15999	Canola	cytosol, mitochondrion	23.03	6.37
CDY12260	Canola	cytosol	10.67	5.96
CDY12259	Canola	cytosol	10.11	5.56
CDY71858	Canola	cytosol, mitochondrion, nucleus, plastid	3.37	4.76
CDY65287	Canola	cytosol	1.69	3.09
CDY30661	Canola	cytosol	2.81	2.16
CDY00206	Canola	nucleus	1.12	1.1
CDY15358	Canola	cytosol, extracellular, plastid	0.56	0.71

Protein Annotations

EnsemblPlants:CDY18160	EnsemblPlantsGene:GSBRNA2T00002684001	InterPro:F-box-assoc_dom_typ3	InterPro:F-box-assoc_interact_dom	PANTHER:PTHR31790	PANTHER:PTHR31790:SF47
PFAM:PF08268	ProteinID:CDY18160	ProteinID:CDY18160.1	TIGRFAMs:TIGR01640	UniParc:UPI0004EE0E74	UniProt:A0A078FUK1
MapMan:35.1	:	:	:	:	:

Description

BnaC05g01830DBnaC05g01830D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FUK1]

Coordinates

chrLK032083:-:111044..111711

Molecular Weight (calculated)

20356.8 Da

IEP (calculated)

8.174

GRAVY (calculated)

0.068

Length

178 amino acids

Sequence
(BLAST)

001: MFTSLWTTSG VLYYKAGAPC ISSVEYIVES MVVCFDLRTE KFSSVKFLGT SCKEPTLVNY NGKLGLLMSG DSTYVNLERT SRSFELWVLG DAAKHEWSKH
101: VYVLPPSWKN IVTETMRIIG MIGDEIVLSL CKQNKHLYVI YYNVESKMIT KVGVQGMDVY RGCYLKTYLN YVEDVKLF

Best Arabidopsis Sequence Match ( AT3G10990.1 )
(BLAST)

001: MIECCKPHVP RGTEICINSV LYYTAVEKGS LMVTIVVCFD ISSEKFSFMK VMETFDRDLP SSTTMINYNG KLGLLMTEES TDIVSGTSKS FELRVLEDAE
101: KHDWSKHVYM LPPLWKNVVG EETKLRLLGM VGSCTNEIVF SYKYPSTFMP SYVFYYNIER NTIIRLEIQG MEELNGK

Arabidopsis Description

F-box associated ubiquitination effector family protein [Source:UniProtKB/TrEMBL;Acc:Q9SRL0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.