CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY12260	Canola	cytosol	93.83	95.3
Bra023245.1-P	Field mustard	cytosol	80.56	54.04
CDX83262	Canola	cytosol, mitochondrion	50.31	40.95
CDY15358	Canola	cytosol, extracellular, plastid	16.98	39.29
CDY66546	Canola	cytosol	30.25	39.2
CDY65287	Canola	cytosol	11.73	39.18
CDY31173	Canola	cytosol, mitochondrion	47.22	38.44
CDY00206	Canola	nucleus	20.06	35.91
CDY60959	Canola	cytosol, mitochondrion, plastid	25.93	30.32
CDY10678	Canola	cytosol	35.8	30.05
CDY71858	Canola	cytosol, mitochondrion, nucleus, plastid	11.42	29.37
CDY30661	Canola	cytosol	20.99	29.31
AT1G46984.1	Thale cress	mitochondrion	33.33	29.19
CDX79453	Canola	plastid	31.79	27.11
CDY67066	Canola	cytosol, mitochondrion, nucleus, peroxisome	31.48	25.19
CDX98860	Canola	cytosol	31.17	25.0
CDY42088	Canola	cytosol	31.48	24.94
CDY19088	Canola	cytosol	31.17	24.94
CDX70134	Canola	cytosol	30.25	24.87
CDY08137	Canola	cytosol	30.56	24.26
CDY05937	Canola	cytosol	25.31	24.26
CDY60961	Canola	cytosol	28.7	23.43
CDY51358	Canola	cytosol	27.16	23.28
CDY08136	Canola	cytosol	29.01	23.21
CDY12627	Canola	cytosol	28.4	23.12
CDY15359	Canola	cytosol, plastid	28.4	23.12
CDY42089	Canola	cytosol	29.01	23.04
CDY19134	Canola	mitochondrion	27.16	23.04
CDY15336	Canola	plastid	27.78	22.96
AT1G46840.1	Thale cress	cytosol	33.64	22.95
CDY15344	Canola	mitochondrion	24.38	22.83
CDY15352	Canola	mitochondrion	28.4	22.77
CDY52272	Canola	cytosol	1.54	22.73
CDY19137	Canola	cytosol, mitochondrion, plastid	28.4	22.66
CDY15333	Canola	mitochondrion	26.85	22.66
CDY72470	Canola	golgi, nucleus, plasma membrane	27.16	22.62
CDY15324	Canola	cytosol	26.54	22.45
CDY19132	Canola	mitochondrion	27.16	22.39
CDY72410	Canola	cytosol	25.31	22.1
CDY15327	Canola	cytosol	25.93	21.82
CDY15332	Canola	cytosol	26.23	21.79
CDY12626	Canola	cytosol	24.69	21.39
CDY66545	Canola	cytosol, peroxisome, plastid	24.07	21.25
CDX97551	Canola	mitochondrion	25.62	21.17
CDY60955	Canola	cytosol, extracellular, plastid, vacuole	20.06	21.17
CDY29772	Canola	cytosol	26.54	21.08
CDY67859	Canola	cytosol, mitochondrion	24.38	20.9
CDX79454	Canola	cytosol	18.83	20.27
CDY29942	Canola	cytosol	18.21	19.87
CDY42091	Canola	mitochondrion	18.83	19.74
CDY08200	Canola	cytosol, golgi, mitochondrion, plasma membrane	26.23	19.23
CDY65288	Canola	mitochondrion	16.36	19.2
CDY29771	Canola	cytosol, plastid	18.83	18.32
CDY52273	Canola	cytosol, plastid	16.36	17.79
CDY46037	Canola	extracellular	7.41	17.65
CDY70182	Canola	extracellular	7.41	17.65
CDY12239	Canola	mitochondrion	14.51	16.85
CDY15326	Canola	cytosol	6.48	16.41
CDY67625	Canola	mitochondrion	12.96	16.34
AT1G46912.1	Thale cress	plasma membrane	15.12	15.71
CDY19127	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	27.16	15.3
CDX97874	Canola	extracellular	12.65	15.3
CDY70684	Canola	cytosol	9.57	15.12
CDY19131	Canola	mitochondrion	26.23	14.29
CDY30662	Canola	extracellular, mitochondrion	4.94	11.59
CDY15353	Canola	cytosol	17.9	11.26
CDY42092	Canola	cytosol	4.63	10.64
CDY18160	Canola	cytosol	5.56	10.11
CDY26564	Canola	mitochondrion	13.27	9.39
CDY15999	Canola	cytosol, mitochondrion	17.9	9.01
CDY15342	Canola	cytosol	2.16	3.07
CDY15357	Canola	cytosol, nucleus, plastid	0.31	1.82

Protein Annotations

EnsemblPlants:CDY12259	EnsemblPlantsGene:GSBRNA2T00061305001	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR31790	PANTHER:PTHR31790:SF10
PFAM:PF00646	ProteinID:CDY12259	ProteinID:CDY12259.1	SMART:SM00256	SUPFAM:SSF81383	TIGRFAMs:TIGR01640
UniParc:UPI0004EE5E67	UniProt:A0A078FGX6	MapMan:35.1	:	:	:

Description

BnaA09g24590DBnaA09g24590D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FGX6]

Coordinates

chrLK032019:+:99026..101336

Molecular Weight (calculated)

37024.9 Da

IEP (calculated)

9.172

GRAVY (calculated)

-0.201

Length

324 amino acids

Sequence
(BLAST)

001: MANWTRLIQL AVGQVGHDAS NSPNGELDWT WASWVSPTPC IVVSGTLNGD LDLANPICPM AGRTMLTIAK IVMSLEKYNN PVKHLKIIKG HIQSSKNSST
101: YVGGNSETLP IDLIIEILKR LPAKAIALCR CVSKEWDSIL CSPHFAKSFL TSSSTRPQLL FTFEFKGKWH FFSSPQLHFN ENISVVAPDY HMGVSGDWYK
201: EVCLSTNGFV YLYEKQMLKG KMERVPVLCN PSTGQKIPLP KVRAKNNELR SFLGYDPIEK QFKFLCMTWH WKKPFYVYFY NVERKSVRRV EIQGIEEKVF
301: MDPAAHHGEV FTFPNHVENL MFRQ

Best Arabidopsis Sequence Match ( AT1G46912.2 )
(BLAST)

001: MPSKEDAMNN QKNDSMDRRK LVRRNSQSSV STYVRETLHI DLIIEIVSRL PLDSIAICRC VSKQWASILQ RPDFAESFLT KSLSRPRLLF TFRSGSKWYY
101: FSSPQPQTFG KNLSVVAKDY SAELWVLDDT KNVKWSKYKF VLPYTASEEV KKSIWATDSG ELVWTLSSPL SHPLYVYYYN LESQSVREVE IKGMKDKVSR
201: DIGNSLVTFT NYVENLMFLQ

Arabidopsis Description

F-box associated ubiquitination effector family protein [Source:UniProtKB/TrEMBL;Acc:Q9C628]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.