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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 3
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
AT1G46984.1 Thale cress mitochondrion 38.32 49.19
CDY70684 Canola cytosol 20.63 47.8
CDX83262 Canola cytosol, mitochondrion 39.79 47.49
CDY31173 Canola cytosol, mitochondrion 39.58 47.24
Bra033850.1-P Field mustard cytosol 25.68 43.57
AT1G46912.1 Thale cress plasma membrane 27.79 42.31
CDY29942 Canola cytosol 25.47 40.74
AT5G65850.1 Thale cress cytosol, mitochondrion 32.21 39.03
AT2G19630.1 Thale cress cytosol, nucleus, plasma membrane 22.74 36.36
AT2G31470.1 Thale cress cytosol 28.63 35.14
AT3G23960.1 Thale cress cytosol 29.47 34.83
CDY12259 Canola cytosol 22.95 33.64
CDY12260 Canola cytosol 21.89 32.6
Bra000514.1-P Field mustard cytosol, nucleus, plasma membrane 38.53 31.66
AT3G49450.1 Thale cress cytosol 26.53 31.5
AT3G61340.2 Thale cress cytosol 27.37 29.89
AT3G47020.1 Thale cress cytosol 18.74 28.43
AT1G53790.2 Thale cress cytosol 26.74 27.55
AT3G47030.1 Thale cress mitochondrion, plasma membrane, plastid 22.32 25.6
Bra023245.1-P Field mustard cytosol 20.84 20.5
Protein Annotations
Gene3D:1.20.1280.50MapMan:35.1EntrezGene:841118ProteinID:AAG50625.1ProteinID:AEE32130.1ArrayExpress:AT1G46840
EnsemblPlantsGene:AT1G46840RefSeq:AT1G46840TAIR:AT1G46840RefSeq:AT1G46840-TAIR-GEnsemblPlants:AT1G46840.1TAIR:AT1G46840.1
Unigene:At.52044InterPro:F-box-assoc_dom_typ3InterPro:F-box-assoc_interact_domInterPro:F-box-like_dom_sfInterPro:F-box_domGO:GO:0003674
GO:GO:0005488GO:GO:0005515InterPro:IPR001810RefSeq:NP_175148.1PFAM:PF00646PFAM:PF08268
PO:PO:0000084PO:PO:0007115PO:PO:0007611PO:PO:0009025PO:PO:0009031PO:PO:0009046
PANTHER:PTHR31790PANTHER:PTHR31790:SF10UniProt:Q9C629SMART:SM00256SUPFAM:SSF81383TIGRFAMs:TIGR01640
TMHMM:TMhelixUniParc:UPI00000A8131SEG:seg:::
Description
Putative F-box protein At1g46840 [Source:UniProtKB/Swiss-Prot;Acc:Q9C629]
Coordinates
chr1:+:17270185..17271706
Molecular Weight (calculated)
55414.0 Da
IEP (calculated)
9.386
GRAVY (calculated)
-0.509
Length
475 amino acids
Sequence
(BLAST)
001: MNIQKDDWMD RRKIVRRNTQ SSASTYVLEK LHIDLVIEIL SRLSAKSIAI CRCVSKQWNS LLVSQDFVES FLRSSLSRPR IWFTFRFDGK WNFFSSPQPQ
101: KFGNNLSVEA TEHHMGSYEN WYMKSCQSVH GFIFMSYNSK GMTDRTQVIW NPCTRQLITL PKLEPENLDF NSFFAYDPTE KQFKVLCMTV VNKQQTTSYK
201: YQVLTLGTGP LLWRNIECPF MYRLRDKSNR GICINGVLYF IGWIKCSTMI IICFDVSSEK FSFIKIENAF IVTLINYRGK LGVYLVVYGS PRGEVWVLDD
301: TKNDNWSKHN FVCPYSGQEN STWATGTGEL VWPSSPWTQP FYVVYYNLER QSFRRVDIKG MENKVSTGKD RYDGFFTFTN HVENLMVLPL HKKTIPIQDT
401: LTNRVMERET LTRSPLTQTA YASSYSTTRS YKSSGKRCSD RSIGEDEQDD IGEKRGDQAA ERRERSTKRG KHEVH
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.