Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
AT1G46984.1 | Thale cress | mitochondrion | 38.32 | 49.19 |
CDY70684 | Canola | cytosol | 20.63 | 47.8 |
CDX83262 | Canola | cytosol, mitochondrion | 39.79 | 47.49 |
CDY31173 | Canola | cytosol, mitochondrion | 39.58 | 47.24 |
Bra033850.1-P | Field mustard | cytosol | 25.68 | 43.57 |
AT1G46912.1 | Thale cress | plasma membrane | 27.79 | 42.31 |
CDY29942 | Canola | cytosol | 25.47 | 40.74 |
AT5G65850.1 | Thale cress | cytosol, mitochondrion | 32.21 | 39.03 |
AT2G19630.1 | Thale cress | cytosol, nucleus, plasma membrane | 22.74 | 36.36 |
AT2G31470.1 | Thale cress | cytosol | 28.63 | 35.14 |
AT3G23960.1 | Thale cress | cytosol | 29.47 | 34.83 |
CDY12259 | Canola | cytosol | 22.95 | 33.64 |
CDY12260 | Canola | cytosol | 21.89 | 32.6 |
Bra000514.1-P | Field mustard | cytosol, nucleus, plasma membrane | 38.53 | 31.66 |
AT3G49450.1 | Thale cress | cytosol | 26.53 | 31.5 |
AT3G61340.2 | Thale cress | cytosol | 27.37 | 29.89 |
AT3G47020.1 | Thale cress | cytosol | 18.74 | 28.43 |
AT1G53790.2 | Thale cress | cytosol | 26.74 | 27.55 |
AT3G47030.1 | Thale cress | mitochondrion, plasma membrane, plastid | 22.32 | 25.6 |
Bra023245.1-P | Field mustard | cytosol | 20.84 | 20.5 |
Protein Annotations
Gene3D:1.20.1280.50 | MapMan:35.1 | EntrezGene:841118 | ProteinID:AAG50625.1 | ProteinID:AEE32130.1 | ArrayExpress:AT1G46840 |
EnsemblPlantsGene:AT1G46840 | RefSeq:AT1G46840 | TAIR:AT1G46840 | RefSeq:AT1G46840-TAIR-G | EnsemblPlants:AT1G46840.1 | TAIR:AT1G46840.1 |
Unigene:At.52044 | InterPro:F-box-assoc_dom_typ3 | InterPro:F-box-assoc_interact_dom | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 |
GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR001810 | RefSeq:NP_175148.1 | PFAM:PF00646 | PFAM:PF08268 |
PO:PO:0000084 | PO:PO:0007115 | PO:PO:0007611 | PO:PO:0009025 | PO:PO:0009031 | PO:PO:0009046 |
PANTHER:PTHR31790 | PANTHER:PTHR31790:SF10 | UniProt:Q9C629 | SMART:SM00256 | SUPFAM:SSF81383 | TIGRFAMs:TIGR01640 |
TMHMM:TMhelix | UniParc:UPI00000A8131 | SEG:seg | : | : | : |
Description
Putative F-box protein At1g46840 [Source:UniProtKB/Swiss-Prot;Acc:Q9C629]
Coordinates
chr1:+:17270185..17271706
Molecular Weight (calculated)
55414.0 Da
IEP (calculated)
9.386
GRAVY (calculated)
-0.509
Length
475 amino acids
Sequence
(BLAST)
(BLAST)
001: MNIQKDDWMD RRKIVRRNTQ SSASTYVLEK LHIDLVIEIL SRLSAKSIAI CRCVSKQWNS LLVSQDFVES FLRSSLSRPR IWFTFRFDGK WNFFSSPQPQ
101: KFGNNLSVEA TEHHMGSYEN WYMKSCQSVH GFIFMSYNSK GMTDRTQVIW NPCTRQLITL PKLEPENLDF NSFFAYDPTE KQFKVLCMTV VNKQQTTSYK
201: YQVLTLGTGP LLWRNIECPF MYRLRDKSNR GICINGVLYF IGWIKCSTMI IICFDVSSEK FSFIKIENAF IVTLINYRGK LGVYLVVYGS PRGEVWVLDD
301: TKNDNWSKHN FVCPYSGQEN STWATGTGEL VWPSSPWTQP FYVVYYNLER QSFRRVDIKG MENKVSTGKD RYDGFFTFTN HVENLMVLPL HKKTIPIQDT
401: LTNRVMERET LTRSPLTQTA YASSYSTTRS YKSSGKRCSD RSIGEDEQDD IGEKRGDQAA ERRERSTKRG KHEVH
101: KFGNNLSVEA TEHHMGSYEN WYMKSCQSVH GFIFMSYNSK GMTDRTQVIW NPCTRQLITL PKLEPENLDF NSFFAYDPTE KQFKVLCMTV VNKQQTTSYK
201: YQVLTLGTGP LLWRNIECPF MYRLRDKSNR GICINGVLYF IGWIKCSTMI IICFDVSSEK FSFIKIENAF IVTLINYRGK LGVYLVVYGS PRGEVWVLDD
301: TKNDNWSKHN FVCPYSGQEN STWATGTGEL VWPSSPWTQP FYVVYYNLER QSFRRVDIKG MENKVSTGKD RYDGFFTFTN HVENLMVLPL HKKTIPIQDT
401: LTNRVMERET LTRSPLTQTA YASSYSTTRS YKSSGKRCSD RSIGEDEQDD IGEKRGDQAA ERRERSTKRG KHEVH
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.