Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 3
- cytosol 2
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT2G31470.1 | Thale cress | cytosol | 39.31 | 44.19 |
| CDY70182 | Canola | extracellular | 13.79 | 44.12 |
| CDY46037 | Canola | extracellular | 13.79 | 44.12 |
| CDY12627 | Canola | cytosol | 39.08 | 42.71 |
| Bra034015.1-P | Field mustard | cytosol, nucleus, peroxisome | 39.08 | 42.71 |
| AT2G19630.1 | Thale cress | cytosol, nucleus, plasma membrane | 28.97 | 42.42 |
| Bra034016.1-P | Field mustard | cytosol | 39.08 | 42.29 |
| AT5G65850.1 | Thale cress | cytosol, mitochondrion | 37.7 | 41.84 |
| CDY12626 | Canola | cytosol | 35.86 | 41.71 |
| CDY67859 | Canola | cytosol, mitochondrion | 35.63 | 41.01 |
| AT3G23960.1 | Thale cress | cytosol | 36.09 | 39.05 |
| AT3G47020.1 | Thale cress | cytosol | 26.44 | 36.74 |
| AT3G49450.1 | Thale cress | cytosol | 33.33 | 36.25 |
| AT1G46984.1 | Thale cress | mitochondrion | 29.43 | 34.59 |
| AT1G53790.2 | Thale cress | cytosol | 33.33 | 31.45 |
| AT3G47030.1 | Thale cress | mitochondrion, plasma membrane, plastid | 29.43 | 30.92 |
| AT1G46840.1 | Thale cress | cytosol | 29.89 | 27.37 |
| AT1G46912.1 | Thale cress | plasma membrane | 19.54 | 27.24 |
Protein Annotations
| MapMan:35.1 | EntrezGene:825306 | UniProt:A0A1I9LRT9 | ProteinID:AEE80188.1 | ProteinID:ANM65297.1 | ArrayExpress:AT3G61340 |
| EnsemblPlantsGene:AT3G61340 | RefSeq:AT3G61340 | TAIR:AT3G61340 | RefSeq:AT3G61340-TAIR-G | EnsemblPlants:AT3G61340.2 | Unigene:At.27688 |
| ProteinID:CAB71064.1 | InterPro:F-box-assoc_dom_typ3 | InterPro:F-box-assoc_interact_dom | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0008150 | InterPro:IPR001810 | RefSeq:NP_001327275.1 | RefSeq:NP_191693.1 |
| PFAM:PF00646 | PFAM:PF08268 | PANTHER:PTHR31790 | PANTHER:PTHR31790:SF10 | SMART:SM00256 | SUPFAM:SSF81383 |
| TIGRFAMs:TIGR01640 | UniParc:UPI000848E4E0 | : | : | : | : |
Description
F-box and associated interaction domains-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LRT9]
Coordinates
chr3:-:22701034..22702530
Molecular Weight (calculated)
50245.2 Da
IEP (calculated)
9.466
GRAVY (calculated)
-0.282
Length
435 amino acids
Sequence
(BLAST)
(BLAST)
001: MIIIRFNQTE GRKKVIRVLR EAASTMMTRR KKRSCSNQKK EEEKSERIPF DLVIEILLRL PVKSIARFRY VSKLWQSTLR GQHFTESYLT ISSSRPKILF
101: TCLKDCETFF FSSPHPQDLS PIAANLHMSF PISCPSNICR PVRGWLCGLH QRTTKGTTVT EPLICNPSTG ESVVLRKVKT RRKGVISFLG FDPIDKNFKV
201: LCMTRSCIGR ADSEEHQVHT LETGKKPSRK MIECDILHYP VPVEHTNGFS QYDGVCINGV LYYLAIVHGV SDDRYPDVVC FEFGSDKFKY IKKVAGHDME
301: ILYLGRRLNS ILVNYKGKLA KLQPNMPNNV CTGIQLWVLE DAEKHEWSSH IYVLPPPWRN VYEETKLCFV GTTRKGEIVL SPNTISDFFY LLYYNPDRNT
401: ITIVKIKGME TFQSHKAYTF LDHLEDVNLV PIWRM
101: TCLKDCETFF FSSPHPQDLS PIAANLHMSF PISCPSNICR PVRGWLCGLH QRTTKGTTVT EPLICNPSTG ESVVLRKVKT RRKGVISFLG FDPIDKNFKV
201: LCMTRSCIGR ADSEEHQVHT LETGKKPSRK MIECDILHYP VPVEHTNGFS QYDGVCINGV LYYLAIVHGV SDDRYPDVVC FEFGSDKFKY IKKVAGHDME
301: ILYLGRRLNS ILVNYKGKLA KLQPNMPNNV CTGIQLWVLE DAEKHEWSSH IYVLPPPWRN VYEETKLCFV GTTRKGEIVL SPNTISDFFY LLYYNPDRNT
401: ITIVKIKGME TFQSHKAYTF LDHLEDVNLV PIWRM
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.