Factsheet for Bra034016.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
nucleus 3
mitochondrion 2
cytosol 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY12626	Canola	cytosol	92.04	98.93
CDY67859	Canola	cytosol, mitochondrion	88.81	94.44
Bra034015.1-P	Field mustard	cytosol, nucleus, peroxisome	73.38	74.12
Bra022876.1-P	Field mustard	cytosol	19.4	50.32
Bra009129.1-P	Field mustard	cytosol	44.03	44.58
Bra022877.1-P	Field mustard	cytosol	42.04	43.11
Bra021730.1-P	Field mustard	cytosol	43.28	42.96
Bra005628.1-P	Field mustard	cytosol	43.53	42.89
Bra021782.1-P	Field mustard	plastid	41.04	42.75
Bra021783.1-P	Field mustard	mitochondrion	41.29	42.46
Bra021784.1-P	Field mustard	plastid	41.04	42.42
Bra021785.1-P	Field mustard	mitochondrion	40.3	42.41
Bra021767.1-P	Field mustard	cytosol	41.79	42.32
Bra027364.1-P	Field mustard	mitochondrion	40.8	41.84
Bra021772.1-P	Field mustard	plastid	40.55	41.79
Bra021702.1-P	Field mustard	cytosol, peroxisome, plastid	41.29	41.6
Bra036901.1-P	Field mustard	cytosol	43.28	41.43
Bra021769.1-P	Field mustard	cytosol	41.29	40.99
Bra017983.1-P	Field mustard	cytosol	40.8	40.49
Bra036902.1-P	Field mustard	cytosol	41.04	40.34
Bra017982.1-P	Field mustard	cytosol	40.8	40.2
Bra005629.1-P	Field mustard	cytosol	37.31	39.37
Bra033850.1-P	Field mustard	cytosol	27.36	39.29
AT3G61340.2	Thale cress	cytosol	42.29	39.08
Bra039989.1-P	Field mustard	cytosol	39.05	38.96
Bra033908.1-P	Field mustard	cytosol	36.57	38.08
Bra019597.1-P	Field mustard	nucleus	16.92	37.57
Bra023809.1-P	Field mustard	mitochondrion	30.35	37.2
Bra021786.1-P	Field mustard	mitochondrion	33.83	36.86
Bra005631.1-P	Field mustard	cytosol	12.94	36.36
Bra021789.1-P	Field mustard	cytosol	41.54	32.75
Bra000514.1-P	Field mustard	cytosol, nucleus, plasma membrane	37.56	26.12
Bra021780.1-P	Field mustard	mitochondrion	38.31	25.88
Bra023245.1-P	Field mustard	cytosol	23.13	19.25
Bra021777.1-P	Field mustard	cytosol	40.8	17.92

Protein Annotations

EnsemblPlants:Bra034016.1	EnsemblPlants:Bra034016.1-P	EnsemblPlantsGene:Bra034016	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-assoc_dom_typ3	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR31790
PANTHER:PTHR31790:SF10	PFAM:PF00646	PFAM:PF08268	SMART:SM00256	SUPFAM:SSF81383	TIGRFAMs:TIGR01640
UniParc:UPI0002545D30	UniProt:M4EYX4	MapMan:35.1	:	:	:

Description

AT3G23960 (E=3e-078) | F-box family protein

Coordinates

chrA02:+:10188726..10189934

Molecular Weight (calculated)

45859.7 Da

IEP (calculated)

8.722

GRAVY (calculated)

-0.111

Length

402 amino acids

Sequence
(BLAST)

001: MKTRRQHAAE NALTISRRST QSPLSIGNSE TIPTDLIIEV LLRLPPKSIP KCRCASKLWD SILRRADFTE LFITRSRARP QLLLSCVENE ELFLFSIPQE
101: VQNQDVVTAN YHTRFPCGRS SKIIGPVRGL VCLTHLRKYK KTAPVICNPS TGQSLPLPNV KTRSTLVNTF LGFDPVGKQF KILSMTTRDY INCEEHQVLT
201: LGTEKKMSWR KIECSISHYF RHINHGICIN GVVYYVAGLN EPPMANGIVC FDVRSEKFKV INRGEEMALW SQSTLVNYKG TLGALLTEGF TEVTGETKCF
301: QLWVLVDAEK HEWSKHISIC LPLLWNNIVA NATLFFVGVT GTDEIVLSPK YVSEPYCFYV YYYNIESNAI RRVEIQGMDA FRHCQIRLSL NHVEDVKLLQ
401: YI

Best Arabidopsis Sequence Match ( AT3G61340.2 )
(BLAST)

001: MIIIRFNQTE GRKKVIRVLR EAASTMMTRR KKRSCSNQKK EEEKSERIPF DLVIEILLRL PVKSIARFRY VSKLWQSTLR GQHFTESYLT ISSSRPKILF
101: TCLKDCETFF FSSPHPQDLS PIAANLHMSF PISCPSNICR PVRGWLCGLH QRTTKGTTVT EPLICNPSTG ESVVLRKVKT RRKGVISFLG FDPIDKNFKV
201: LCMTRSCIGR ADSEEHQVHT LETGKKPSRK MIECDILHYP VPVEHTNGFS QYDGVCINGV LYYLAIVHGV SDDRYPDVVC FEFGSDKFKY IKKVAGHDME
301: ILYLGRRLNS ILVNYKGKLA KLQPNMPNNV CTGIQLWVLE DAEKHEWSSH IYVLPPPWRN VYEETKLCFV GTTRKGEIVL SPNTISDFFY LLYYNPDRNT
401: ITIVKIKGME TFQSHKAYTF LDHLEDVNLV PIWRM

Arabidopsis Description

F-box and associated interaction domains-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LRT9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.