Factsheet for Bra021786.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
nucleus 2
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra021769.1-P	Field mustard	cytosol	73.71	67.16
Bra021785.1-P	Field mustard	mitochondrion	54.47	52.62
Bra021789.1-P	Field mustard	cytosol	71.0	51.37
Bra021782.1-P	Field mustard	plastid	52.85	50.52
Bra021784.1-P	Field mustard	plastid	53.12	50.39
Bra021783.1-P	Field mustard	mitochondrion	53.12	50.13
Bra027364.1-P	Field mustard	mitochondrion	52.85	49.74
Bra021772.1-P	Field mustard	plastid	52.57	49.74
Bra021767.1-P	Field mustard	cytosol	53.12	49.37
Bra023809.1-P	Field mustard	mitochondrion	42.28	47.56
Bra039989.1-P	Field mustard	cytosol	50.41	46.15
Bra021780.1-P	Field mustard	mitochondrion	68.83	42.69
Bra005628.1-P	Field mustard	cytosol	39.84	36.03
AT3G23960.1	Thale cress	cytosol	39.02	35.82
Bra021702.1-P	Field mustard	cytosol, peroxisome, plastid	36.86	34.09
Bra034016.1-P	Field mustard	cytosol	36.86	33.83
Bra019597.1-P	Field mustard	nucleus	16.53	33.7
Bra021730.1-P	Field mustard	cytosol	36.31	33.09
Bra034015.1-P	Field mustard	cytosol, nucleus, peroxisome	35.5	32.91
Bra005629.1-P	Field mustard	cytosol	33.6	32.55
Bra022877.1-P	Field mustard	cytosol	33.88	31.89
Bra036902.1-P	Field mustard	cytosol	35.23	31.78
Bra009129.1-P	Field mustard	cytosol	34.15	31.74
Bra036901.1-P	Field mustard	cytosol	34.96	30.71
Bra017982.1-P	Field mustard	cytosol	31.71	28.68
Bra033850.1-P	Field mustard	cytosol	21.68	28.57
Bra033908.1-P	Field mustard	cytosol	29.0	27.72
Bra017983.1-P	Field mustard	cytosol	29.0	26.42
Bra022876.1-P	Field mustard	cytosol	10.03	23.87
Bra000514.1-P	Field mustard	cytosol, nucleus, plasma membrane	31.71	20.24
Bra023245.1-P	Field mustard	cytosol	22.49	17.18
Bra021777.1-P	Field mustard	cytosol	39.02	15.74
Bra005631.1-P	Field mustard	cytosol	5.96	15.38

Protein Annotations

Gene3D:1.20.1280.50	MapMan:35.1	EnsemblPlantsGene:Bra021786	EnsemblPlants:Bra021786.1	EnsemblPlants:Bra021786.1-P	InterPro:F-box-assoc_dom_typ3
InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	UniProt:M4DZ39	PFAM:PF08268	PANTHER:PTHR31790
PANTHER:PTHR31790:SF10	SMART:SM00256	SUPFAM:SSF117281	SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI0002544F1F
SEG:seg	:	:	:	:	:

Description

AT2G31470 (E=6e-066) | F-box family protein

Coordinates

chrA04:-:14451381..14452490

Molecular Weight (calculated)

42637.2 Da

IEP (calculated)

9.736

GRAVY (calculated)

-0.390

Length

369 amino acids

Sequence
(BLAST)

001: MTSRRTTRSM TRRHRNSLPL PDDLAMEIFT RLPWKAMARC RCACKLWSSM LRRQDFTELF LTKSCARPQL LFVREDYSVR EIVFITSPQP ENPEENSYVV
101: ATNHLARFPR SNGFYGCTNG FFCYGADWFF KRLKLPVICN PSTAQSLTMP RLISKKRYGV QSYLGYEPME KEFKLLSMNS SRNGERISVE HQVLTLGTKK
201: LSWRLVECCI PHRSSSQWIC ISGVLYYAAR AVGSSVNSMV VSFDLRSEKF SSVKFGKAMP DSTTLVNYDG KLGLLMSGDS HYVTRSSTSF KLWVLLDAAQ
301: HEWSNHVYVC GFRDHVHCWN GWYKRNRLLP ELPKSAFLCH LLQRGEKDDH QSWNPRTGSV SGYEFQNLS

Best Arabidopsis Sequence Match ( AT1G46984.1 )
(BLAST)

001: MNRRKNDFLV RPKRIRCYTQ LSTLPIDLII EILSRLPMNS IAICRLVSKQ WASILQSSDF TESFLIKSPP RPRLLFTIRY GSKWHLFSAP QPRNFDENFP
101: VVATDYHKGF SGNWCMQSFQ LVNGFIYLNN RLSLKGKIDR VSVIWNPSTG QQIPLPDLGV KNSHSKSFFG YDPIEKQFKV LCITSSKEHQ VLTLGTGRKL
201: SWRKIEYSYP HYPRKKSNGI CINGVLYYRN TNAMIVRFDV RSEEFRFVEI KMYVEILSLI NYKGKLGVLF PNTDLAQLWV LDDTNKVEWS KHNFVFPDTT
301: FEAIRATDTG EMFCASSCWR DSLYVSYYDL EKESVKKVKI KGIEDKLSIG KHHANEFFIF PNHVENVMVL

Arabidopsis Description

Putative F-box protein At1g46984 [Source:UniProtKB/Swiss-Prot;Acc:Q9C627]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.