Factsheet for Bra039989.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51358	Canola	cytosol	91.32	97.35
Bra021769.1-P	Field mustard	cytosol	61.54	61.23
Bra021785.1-P	Field mustard	mitochondrion	56.82	59.95
Bra021783.1-P	Field mustard	mitochondrion	56.82	58.57
Bra027364.1-P	Field mustard	mitochondrion	56.08	57.65
Bra021782.1-P	Field mustard	plastid	55.09	57.51
Bra021784.1-P	Field mustard	plastid	55.34	57.33
Bra021767.1-P	Field mustard	cytosol	55.83	56.68
Bra021772.1-P	Field mustard	plastid	54.59	56.41
Bra023809.1-P	Field mustard	mitochondrion	44.91	55.18
Bra021786.1-P	Field mustard	mitochondrion	46.15	50.41
Bra021789.1-P	Field mustard	cytosol	59.31	46.86
AT3G23960.1	Thale cress	cytosol	42.18	42.29
Bra005628.1-P	Field mustard	cytosol	41.19	40.69
Bra021730.1-P	Field mustard	cytosol	40.69	40.49
Bra034016.1-P	Field mustard	cytosol	38.96	39.05
Bra021780.1-P	Field mustard	mitochondrion	57.32	38.82
Bra034015.1-P	Field mustard	cytosol, nucleus, peroxisome	38.21	38.69
Bra005631.1-P	Field mustard	cytosol	13.65	38.46
Bra005629.1-P	Field mustard	cytosol	36.23	38.32
Bra022877.1-P	Field mustard	cytosol	37.22	38.27
Bra036902.1-P	Field mustard	cytosol	37.22	36.67
Bra021702.1-P	Field mustard	cytosol, peroxisome, plastid	36.23	36.59
Bra022876.1-P	Field mustard	cytosol	13.9	36.13
Bra009129.1-P	Field mustard	cytosol	35.48	36.02
Bra036901.1-P	Field mustard	cytosol	36.97	35.48
Bra033850.1-P	Field mustard	cytosol	24.32	35.0
Bra019597.1-P	Field mustard	nucleus	15.38	34.25
Bra017982.1-P	Field mustard	cytosol	33.99	33.58
Bra033908.1-P	Field mustard	cytosol	32.01	33.42
Bra017983.1-P	Field mustard	cytosol	31.76	31.6
Bra000514.1-P	Field mustard	cytosol, nucleus, plasma membrane	34.24	23.88
Bra023245.1-P	Field mustard	cytosol	23.57	19.67
Bra021777.1-P	Field mustard	cytosol	41.94	18.47

Protein Annotations

EnsemblPlants:Bra039989.1	EnsemblPlants:Bra039989.1-P	EnsemblPlantsGene:Bra039989	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-assoc_dom_typ3	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810
PANTHER:PTHR31790	PANTHER:PTHR31790:SF47	PFAM:PF00646	PFAM:PF08268	SEG:seg	SMART:SM00256
SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI0002544410	UniProt:M4FFW5	MapMan:35.1	:

Description

AT2G31470 (E=7e-078) | F-box family protein

Coordinates

chrA04:+:13243122..13244333

Molecular Weight (calculated)

45563.1 Da

IEP (calculated)

7.604

GRAVY (calculated)

0.107

Length

403 amino acids

Sequence
(BLAST)

001: MEPLQKNFSD MTISGGVTGS TSTLHRNSLP ILDEVIAEIF SRLSSESIAR CRCVCKLWSS ILAHQDFTES FLTKSRARPQ LLFACDAFTG TFFFSSAQPE
101: NPKENSYVVA SNHLARFSIS DELCGCTNGF FLYVSKMIWI QNEFQLYVPL MCNPSTGQFL TLPKLKSGKS CGVENYLGYE PIANELKVFS MELSRVNGVL
201: ISVEHQVLTT EAKILSWRCV QCCIPHYASR KWICISGVIY YAASSHSYSL ISVVACFDLR SEKLSFIKFM ETFSKEMHHS ATIVNYNGKL GLLMSRDYGL
301: VHRANASFEL WVLQDAAKHE WSKLVFVLPP LWKDVVVDTM CISGMVGTNE IVFSPIYQRD PFYVIYYNVE SKTITKIGIQ GLEAFQGKSL NIYLNYVENV
401: KLL

Best Arabidopsis Sequence Match ( AT1G53360.1 )
(BLAST)

001: MFSRVPAKSI ARFRCVSESI HRRPDVTEQS LTKSMSRPRL LFALEVNKDL LFFSSPQPQN PYDNSSLVAT PYKRFPKYLP TRICTTLGGL VFLQKWLRKK
101: TRVICNPVSG DYITLPKVKA TGVGESYFGF DPITKQFKVL CMTWSRYGTP NTHQVLTLET GKRLWRTIQD PILPHYRSFD RICINGVLYY GADFEESQSS
201: KIVCFDFRFE KFSFINIADE GMFRGSYKWT LFNYKGKLGA HQYSRNGELV LWVLEDAENH KWSKSICILP PIVHNSRIVG VTGTGEIVFS PYACYMPSPF
301: YIFFYNIQTK TCTRVHVKGF EEFKHNFTLL HTFLDFVEDT KFM

Arabidopsis Description

Putative F-box protein At1g53360 [Source:UniProtKB/Swiss-Prot;Acc:Q3ECR3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.