CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra039989.1-P	Field mustard	cytosol	97.35	91.32
CDX97874	Canola	extracellular	56.61	79.85
CDY52272	Canola	cytosol	4.23	72.73
CDY15326	Canola	cytosol	22.49	66.41
CDY60959	Canola	cytosol, mitochondrion, plastid	43.92	59.93
CDY15336	Canola	plastid	61.11	58.93
CDY15332	Canola	cytosol	60.05	58.21
CDY15324	Canola	cytosol	58.73	57.96
CDY18160	Canola	cytosol	26.98	57.3
CDY15327	Canola	cytosol	57.14	56.1
CDY15352	Canola	mitochondrion	59.79	55.94
CDY19134	Canola	mitochondrion	56.08	55.5
CDY19137	Canola	cytosol, mitochondrion, plastid	58.99	54.93
CDY60955	Canola	cytosol, extracellular, plastid, vacuole	44.44	54.72
CDY15333	Canola	mitochondrion	55.03	54.17
CDY15359	Canola	cytosol, plastid	56.61	53.77
CDX97551	Canola	mitochondrion	55.29	53.32
CDY60961	Canola	cytosol	55.56	52.9
CDY15357	Canola	cytosol, nucleus, plastid	7.67	52.73
CDY19132	Canola	mitochondrion	53.97	51.91
CDY15358	Canola	cytosol, extracellular, plastid	19.05	51.43
CDY46037	Canola	extracellular	17.72	49.26
CDY70182	Canola	extracellular	17.72	49.26
CDY52273	Canola	cytosol, plastid	38.1	48.32
CDY71858	Canola	cytosol, mitochondrion, nucleus, plastid	15.61	46.83
CDY42092	Canola	cytosol	15.08	40.43
CDY65287	Canola	cytosol	10.32	40.21
AT3G23960.1	Thale cress	cytosol	42.33	39.8
CDX79454	Canola	cytosol	30.69	38.54
CDY42089	Canola	cytosol	41.27	38.24
CDY67066	Canola	cytosol, mitochondrion, nucleus, peroxisome	40.74	38.02
CDY12239	Canola	mitochondrion	28.04	37.99
CDY19088	Canola	cytosol	40.48	37.78
CDY19131	Canola	mitochondrion	57.94	36.81
CDY66546	Canola	cytosol	24.07	36.4
CDX98860	Canola	cytosol	38.89	36.39
CDY15344	Canola	mitochondrion	33.07	36.13
CDY12627	Canola	cytosol	37.57	35.68
CDY29771	Canola	cytosol, plastid	30.95	35.14
CDY67625	Canola	mitochondrion	23.81	35.02
CDX70134	Canola	cytosol	35.98	34.52
CDY42091	Canola	mitochondrion	28.04	34.3
CDY42088	Canola	cytosol	37.04	34.23
CDY12626	Canola	cytosol	33.86	34.22
CDY31173	Canola	cytosol, mitochondrion	35.98	34.17
CDY65288	Canola	mitochondrion	24.87	34.06
CDY72470	Canola	golgi, nucleus, plasma membrane	34.92	33.93
CDY29772	Canola	cytosol	36.51	33.82
CDX83262	Canola	cytosol, mitochondrion	35.45	33.67
CDY67859	Canola	cytosol, mitochondrion	33.6	33.6
CDY66545	Canola	cytosol, peroxisome, plastid	32.54	33.52
CDY30662	Canola	extracellular, mitochondrion	12.17	33.33
CDY00206	Canola	nucleus	15.87	33.15
CDY15353	Canola	cytosol	43.65	32.04
CDY08137	Canola	cytosol	33.6	31.13
CDY08136	Canola	cytosol	33.07	30.86
CDY70684	Canola	cytosol	16.67	30.73
CDX79453	Canola	plastid	30.69	30.53
CDY05937	Canola	cytosol	27.25	30.47
CDY10678	Canola	cytosol	30.69	30.05
CDY72410	Canola	cytosol	29.37	29.92
CDY29942	Canola	cytosol	22.22	28.28
CDY12259	Canola	cytosol	23.28	27.16
CDY12260	Canola	cytosol	22.75	26.96
CDY08200	Canola	cytosol, golgi, mitochondrion, plasma membrane	30.42	26.02
CDY19127	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	38.36	25.22
CDY30661	Canola	cytosol	15.08	24.57
CDY26564	Canola	mitochondrion	24.6	20.31
CDY15999	Canola	cytosol, mitochondrion	26.98	15.84
CDY15342	Canola	cytosol	6.08	10.09

Protein Annotations

Gene3D:1.20.1280.50	MapMan:35.1	UniProt:A0A078IQJ1	EnsemblPlants:CDY51358	ProteinID:CDY51358	ProteinID:CDY51358.1
InterPro:F-box-assoc_dom_typ3	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00003265001	InterPro:IPR001810	PFAM:PF00646	PFAM:PF08268	PANTHER:PTHR31790
PANTHER:PTHR31790:SF47	SMART:SM00256	SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI0004EEFB19	SEG:seg

Description

BnaA04g28520DBnaA04g28520D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IQJ1]

Coordinates

chrLK032988:-:29058..30269

Molecular Weight (calculated)

42603.5 Da

IEP (calculated)

6.957

GRAVY (calculated)

0.131

Length

378 amino acids

Sequence
(BLAST)

001: MEPLQKNFSD MTISGGVTGS TSTLHRNSLP ILDEVIAEIF SRLSSESIAR CRCVCKLWSS ILAHQDFTES FLTKSRARPQ LLFACDACTG VFFFSSAQPE
101: NPKENSFVVA SNHLARFSIS DELCGCTNGF FLYVSKMIWI ENELQLYVPL MCNPSTGQFL TLPKLKSGKS CGVQSYLGYE PFANELKVFS MEVSRVNGVL
201: ISVEHQWICI SGVIYYAASS HSYSLISMVA CFDLRSEKLS FIKFMETFSK EMHHSATIVN YNGKLGLLMS RDYGLVHRAN ASFELWVLQD AAKHEWSKLV
301: FVLPPLWKDV VVDTMCISGM VGTNEIVFSP IYQRDPFYVI YYNVESKTIT KIGIQGLEAF QGKSLNIYLN YVENVKLL

Best Arabidopsis Sequence Match ( AT1G53360.1 )
(BLAST)

001: MFSRVPAKSI ARFRCVSESI HRRPDVTEQS LTKSMSRPRL LFALEVNKDL LFFSSPQPQN PYDNSSLVAT PYKRFPKYLP TRICTTLGGL VFLQKWLRKK
101: TRVICNPVSG DYITLPKVKA TGVGESYFGF DPITKQFKVL CMTWSRYGTP NTHQVLTLET GKRLWRTIQD PILPHYRSFD RICINGVLYY GADFEESQSS
201: KIVCFDFRFE KFSFINIADE GMFRGSYKWT LFNYKGKLGA HQYSRNGELV LWVLEDAENH KWSKSICILP PIVHNSRIVG VTGTGEIVFS PYACYMPSPF
301: YIFFYNIQTK TCTRVHVKGF EEFKHNFTLL HTFLDFVEDT KFM

Arabidopsis Description

Putative F-box protein At1g53360 [Source:UniProtKB/Swiss-Prot;Acc:Q3ECR3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.