Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY65287 | Canola | cytosol | 24.25 | 91.75 |
| CDY65288 | Canola | mitochondrion | 57.49 | 76.45 |
| CDY66546 | Canola | cytosol | 51.77 | 76.0 |
| Bra021702.1-P | Field mustard | cytosol, peroxisome, plastid | 77.93 | 71.68 |
| AT2G31470.1 | Thale cress | cytosol | 47.96 | 45.48 |
| CDY67066 | Canola | cytosol, mitochondrion, nucleus, peroxisome | 48.77 | 44.2 |
| CDY15357 | Canola | cytosol, nucleus, plastid | 6.54 | 43.64 |
| CDX98860 | Canola | cytosol | 47.68 | 43.32 |
| CDY19088 | Canola | cytosol | 47.41 | 42.96 |
| CDX70134 | Canola | cytosol | 46.05 | 42.89 |
| CDY52273 | Canola | cytosol, plastid | 32.7 | 40.27 |
| CDY15344 | Canola | mitochondrion | 36.78 | 39.02 |
| CDY15358 | Canola | cytosol, extracellular, plastid | 14.71 | 38.57 |
| CDY29771 | Canola | cytosol, plastid | 34.6 | 38.14 |
| CDY42089 | Canola | cytosol | 42.23 | 37.99 |
| CDY15324 | Canola | cytosol | 39.51 | 37.86 |
| CDY42088 | Canola | cytosol | 41.96 | 37.65 |
| CDY00206 | Canola | nucleus | 18.53 | 37.57 |
| CDY15352 | Canola | mitochondrion | 40.87 | 37.13 |
| CDY15336 | Canola | plastid | 39.51 | 36.99 |
| CDY60961 | Canola | cytosol | 39.78 | 36.78 |
| CDY19137 | Canola | cytosol, mitochondrion, plastid | 40.6 | 36.7 |
| CDY15332 | Canola | cytosol | 38.96 | 36.67 |
| CDY71858 | Canola | cytosol, mitochondrion, nucleus, plastid | 12.53 | 36.51 |
| CDY60955 | Canola | cytosol, extracellular, plastid, vacuole | 30.52 | 36.48 |
| CDY15359 | Canola | cytosol, plastid | 39.24 | 36.18 |
| CDY42091 | Canola | mitochondrion | 30.25 | 35.92 |
| CDX97551 | Canola | mitochondrion | 38.15 | 35.71 |
| CDY31173 | Canola | cytosol, mitochondrion | 38.69 | 35.68 |
| CDY15327 | Canola | cytosol | 37.33 | 35.58 |
| CDY12626 | Canola | cytosol | 35.97 | 35.29 |
| CDX83262 | Canola | cytosol, mitochondrion | 38.15 | 35.18 |
| CDY19134 | Canola | mitochondrion | 36.24 | 34.82 |
| CDY12239 | Canola | mitochondrion | 26.43 | 34.77 |
| CDY72470 | Canola | golgi, nucleus, plasma membrane | 36.78 | 34.7 |
| CDY67859 | Canola | cytosol, mitochondrion | 35.69 | 34.66 |
| CDY19132 | Canola | mitochondrion | 36.78 | 34.35 |
| CDX79454 | Canola | cytosol | 28.07 | 34.22 |
| CDY08136 | Canola | cytosol | 37.6 | 34.07 |
| CDY05937 | Canola | cytosol | 31.34 | 34.02 |
| CDY29772 | Canola | cytosol | 37.6 | 33.82 |
| CDY10678 | Canola | cytosol | 35.42 | 33.68 |
| CDY12627 | Canola | cytosol | 36.51 | 33.67 |
| CDY08137 | Canola | cytosol | 37.33 | 33.58 |
| CDY67625 | Canola | mitochondrion | 23.43 | 33.46 |
| CDY15333 | Canola | mitochondrion | 34.88 | 33.33 |
| CDY30661 | Canola | cytosol | 20.71 | 32.76 |
| CDX79453 | Canola | plastid | 33.79 | 32.63 |
| CDY51358 | Canola | cytosol | 33.52 | 32.54 |
| CDY70684 | Canola | cytosol | 17.98 | 32.2 |
| CDY72410 | Canola | cytosol | 32.43 | 32.08 |
| CDY60959 | Canola | cytosol, mitochondrion, plastid | 23.16 | 30.69 |
| CDY29942 | Canola | cytosol | 23.71 | 29.29 |
| CDY18160 | Canola | cytosol | 13.35 | 27.53 |
| CDY08200 | Canola | cytosol, golgi, mitochondrion, plasma membrane | 32.97 | 27.38 |
| CDX97874 | Canola | extracellular | 19.62 | 26.87 |
| CDY42092 | Canola | cytosol | 10.08 | 26.24 |
| CDY19127 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 39.51 | 25.22 |
| CDY15326 | Canola | cytosol | 8.72 | 25.0 |
| CDY19131 | Canola | mitochondrion | 40.33 | 24.87 |
| CDY46037 | Canola | extracellular | 8.99 | 24.26 |
| CDY70182 | Canola | extracellular | 8.99 | 24.26 |
| CDY12259 | Canola | cytosol | 21.25 | 24.07 |
| CDY12260 | Canola | cytosol | 19.89 | 22.88 |
| CDY30662 | Canola | extracellular, mitochondrion | 8.17 | 21.74 |
| CDY15353 | Canola | cytosol | 29.97 | 21.36 |
| CDY26564 | Canola | mitochondrion | 24.8 | 19.87 |
| CDY15999 | Canola | cytosol, mitochondrion | 29.16 | 16.61 |
| CDY15342 | Canola | cytosol | 7.08 | 11.4 |
| CDY52272 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY66545 | EnsemblPlantsGene:GSBRNA2T00054520001 | Gene3D:1.20.1280.50 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:F-box-assoc_dom_typ3 | InterPro:F-box-assoc_interact_dom | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | PANTHER:PTHR31790 |
| PANTHER:PTHR31790:SF10 | PFAM:PF00646 | PFAM:PF08268 | ProteinID:CDY66545 | ProteinID:CDY66545.1 | SMART:SM00256 |
| SUPFAM:SSF81383 | TIGRFAMs:TIGR01640 | UniParc:UPI0004EE24D4 | UniProt:A0A078JJ96 | MapMan:35.1 | : |
Description
BnaUnng01490DBnaUnng01490D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JJ96]
Coordinates
chrLK035317:-:1..4251
Molecular Weight (calculated)
41684.3 Da
IEP (calculated)
8.207
GRAVY (calculated)
-0.132
Length
367 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSRRRNIPE GHNTILQCHS RTCTEEYSET IPHDLIIEIV SRLPTKSVAR CRCVSKLWSS LLVHPHFTET YLTRSSASPK ILFACVKDSK VFFFTSPQPD
101: DDDKASSAAT YHMNFPFDHV IDIYSPMSGL VCIRDDRILK GRKSAAMVWE ICNPSTGQSF ILPKMKSRKW TGAKSFFGYD PTEKQFKVLS MFITKNGISN
201: EHQVLTLEPT GKLSVRIIEC SIPHYPQSPG ICINGVLYYK ASPNWSSEVD GIMCFDVRSE TFRFVQVMEP FIRAVHPLAT LINYNGKLAS VMSTQSYNYI
301: DEKSTGFVMY VVQDIEKQEW SKHNYELTRL PEYGVAMLFF AGVTVAGEIV LLPKIHLTAF QCSFPGF
101: DDDKASSAAT YHMNFPFDHV IDIYSPMSGL VCIRDDRILK GRKSAAMVWE ICNPSTGQSF ILPKMKSRKW TGAKSFFGYD PTEKQFKVLS MFITKNGISN
201: EHQVLTLEPT GKLSVRIIEC SIPHYPQSPG ICINGVLYYK ASPNWSSEVD GIMCFDVRSE TFRFVQVMEP FIRAVHPLAT LINYNGKLAS VMSTQSYNYI
301: DEKSTGFVMY VVQDIEKQEW SKHNYELTRL PEYGVAMLFF AGVTVAGEIV LLPKIHLTAF QCSFPGF
001: MKSRRQNVSV ARQTILGRDE NFEPIPIDLV IEIFSRSPVK SIARCRCVSK LWASILRLPY FTELYLTKSC ARPRLLFACQ KHRELFFFST PQPHNPNESS
101: SPLAASFHMK IPFDGRFNII SPIGGLVFVR YEQILKGRKT PEFVSAICNP STGQSLTLPK PKTRKRIWGT SHFGYDPIEK QFKVLSMNIG DGVYKEHYVL
201: TLGTENLSWR RIECSIPHVH GSKGICINGV LYYRAKADMF SECTWRGLVN FCWNDWYK
101: SPLAASFHMK IPFDGRFNII SPIGGLVFVR YEQILKGRKT PEFVSAICNP STGQSLTLPK PKTRKRIWGT SHFGYDPIEK QFKVLSMNIG DGVYKEHYVL
201: TLGTENLSWR RIECSIPHVH GSKGICINGV LYYRAKADMF SECTWRGLVN FCWNDWYK
Arabidopsis Description
DORF-box protein DOR [Source:UniProtKB/Swiss-Prot;Acc:Q5BPS3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.