CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15324	Canola	cytosol	79.21	83.55
CDY15332	Canola	cytosol	80.45	83.33
CDY60959	Canola	cytosol, mitochondrion, plastid	56.44	82.31
CDY19137	Canola	cytosol, mitochondrion, plastid	81.93	81.53
CDY15326	Canola	cytosol	25.74	81.25
CDY15336	Canola	plastid	72.03	74.23
CDY52272	Canola	cytosol	3.96	72.73
CDY19134	Canola	mitochondrion	61.88	65.44
CDY15359	Canola	cytosol, plastid	63.37	64.32
CDY15327	Canola	cytosol	61.14	64.16
CDY15333	Canola	mitochondrion	60.64	63.8
CDY60955	Canola	cytosol, extracellular, plastid, vacuole	48.27	63.52
CDY60961	Canola	cytosol	62.13	63.22
CDX97551	Canola	mitochondrion	60.4	62.24
CDY19132	Canola	mitochondrion	59.16	60.81
CDY52273	Canola	cytosol, plastid	44.55	60.4
CDY51358	Canola	cytosol	55.94	59.79
CDY18160	Canola	cytosol	25.5	57.87
CDY71858	Canola	cytosol, mitochondrion, nucleus, plastid	17.57	56.35
CDY15358	Canola	cytosol, extracellular, plastid	19.31	55.71
CDY15357	Canola	cytosol, nucleus, plastid	7.18	52.73
CDX97874	Canola	extracellular	33.91	51.12
CDY19131	Canola	mitochondrion	72.52	49.24
AT3G23960.1	Thale cress	cytosol	46.29	46.52
CDY70182	Canola	extracellular	15.1	44.85
CDY46037	Canola	extracellular	15.1	44.85
CDX79454	Canola	cytosol	33.17	44.52
CDY65288	Canola	mitochondrion	29.95	43.84
CDY12239	Canola	mitochondrion	30.2	43.73
CDX98860	Canola	cytosol	43.07	43.07
CDY66546	Canola	cytosol	26.49	42.8
CDY42089	Canola	cytosol	42.33	41.91
CDY29771	Canola	cytosol, plastid	34.16	41.44
CDY15344	Canola	mitochondrion	35.4	41.33
CDY67066	Canola	cytosol, mitochondrion, nucleus, peroxisome	41.34	41.23
CDX70134	Canola	cytosol	40.1	41.12
CDY19088	Canola	cytosol	41.09	40.99
CDY66545	Canola	cytosol, peroxisome, plastid	37.13	40.87
CDY12627	Canola	cytosol	40.1	40.7
CDY72470	Canola	golgi, nucleus, plasma membrane	38.61	40.1
CDY67625	Canola	mitochondrion	25.25	39.69
CDY12626	Canola	cytosol	36.63	39.57
CDY65287	Canola	cytosol	9.41	39.18
CDY42092	Canola	cytosol	13.61	39.01
CDY42088	Canola	cytosol	39.11	38.63
CDY67859	Canola	cytosol, mitochondrion	36.14	38.62
CDY42091	Canola	mitochondrion	28.71	37.54
CDY31173	Canola	cytosol, mitochondrion	36.63	37.19
CDY15353	Canola	cytosol	47.28	37.09
CDY29772	Canola	cytosol	36.88	36.52
CDY70684	Canola	cytosol	18.32	36.1
CDX83262	Canola	cytosol, mitochondrion	35.15	35.68
CDY08137	Canola	cytosol	35.89	35.54
CDY30662	Canola	extracellular, mitochondrion	12.13	35.51
CDY30661	Canola	cytosol	20.05	34.91
CDX79453	Canola	plastid	32.67	34.74
CDY05937	Canola	cytosol	27.97	33.43
CDY72410	Canola	cytosol	30.69	33.42
CDY00206	Canola	nucleus	14.85	33.15
CDY08136	Canola	cytosol	33.17	33.09
CDY08200	Canola	cytosol, golgi, mitochondrion, plasma membrane	34.65	31.67
CDY29942	Canola	cytosol	22.77	30.98
CDY10678	Canola	cytosol	29.46	30.83
CDY19127	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	43.07	30.26
CDY12259	Canola	cytosol	22.77	28.4
CDY12260	Canola	cytosol	22.28	28.21
CDY26564	Canola	mitochondrion	22.28	19.65
CDY15999	Canola	cytosol, mitochondrion	25.99	16.3
CDY15342	Canola	cytosol	7.92	14.04

Protein Annotations

EnsemblPlants:CDY15352	EnsemblPlantsGene:GSBRNA2T00085638001	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-assoc_dom_typ3	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR31790
PANTHER:PTHR31790:SF47	PFAM:PF00646	PFAM:PF08268	ProteinID:CDY15352	ProteinID:CDY15352.1	SMART:SM00256
SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI0004EEF7BA	UniProt:A0A078FR64	MapMan:35.1	:

Description

BnaC04g42710DBnaC04g42710D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FR64]

Coordinates

chrLK032054:-:229847..231061

Molecular Weight (calculated)

45536.1 Da

IEP (calculated)

8.456

GRAVY (calculated)

-0.066

Length

404 amino acids

Sequence
(BLAST)

001: MQPPRQNVSK GGELTIYRGV TRSMTRRHRN SLPVPDDLAM EIFTRLPSKA IARCRCACKL WSSMLRSQDF TELFLTKSCA RPQLLFVLDD YSVGELVFIS
101: SPQPENPEEN SYVVASNPLA FFPRYIGFYG CTNGFFCYGA GRNLKGLKLP VCVPVICNPS TGQSLTMPRL ISKKKYGVQS YLGYEPMEKE FKVLSMNKSR
201: TGEVISVEHQ VLTLGTKKLS WRLVECCIPH RSSSKWICIS GVLYYAASAA GSFENSMVVC FDLRSEKFCS VMFSKAMPRS TTLVNYDGKL GLLMSGDSHD
301: DVTRATTSFE LWVLLDAAQH EWSNHVYVLP PSWEDVVSED MRIAGMVAVN EIVLAPWFQS VPSYVIYFNV ERKTITKVGI QGLEAFQGES FKTYLNYVEN
401: VKLL

Best Arabidopsis Sequence Match ( AT1G53790.1 )
(BLAST)

001: MVRDIVDDPL DEDDIALVKT YGLVPYSAPI KKVEKEIKEL TEKINDLCGI KESDTGLAPL SKQMMQEGQP LQVGYVSCFR YIPIDLLMDI FSRVPAKSIA
101: RFRCVSKLWE SILCRPDFKE LFMTMSSIRP PLLLFTFQDD DGNLFFFSSP HPQIPCNENT SLVPTRYHVQ HTTDSFSEIG SPLCGFICRR GKRNLDTMVI
201: CNPVTGESVS LPKVELKSIN TETRPYLGYD PVRKQLKVLC IKSDDIPNTC DEHQVLTLEN GNHLWRTIQC KPHYPKSDGI CIDGILYYTA GFDMRARVSM
301: VVCFDVRSEK FSFINIHVFM LMNDSCTLIN YKGKLGALQF TCLSPKRLRF WVLVNAEKNI WTKCIYALPP LWNNLVQHTE LAIVGMTDGG EVVLSQYCLI
401: YAFYIYYFNL ESKSLTRVQI QDVEMFKRTR VYTSLGYVEN FKLM

Arabidopsis Description

F-box and associated interaction domains-containing protein [Source:UniProtKB/TrEMBL;Acc:B3H7F2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.