CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15326	Canola	cytosol	68.18	11.72
CDY60959	Canola	cytosol, mitochondrion, plastid	77.27	6.14
CDY70182	Canola	extracellular	36.36	5.88
CDY46037	Canola	extracellular	36.36	5.88
CDY42092	Canola	cytosol	36.36	5.67
CDY18160	Canola	cytosol	45.45	5.62
CDX97551	Canola	mitochondrion	95.45	5.36
CDY30662	Canola	extracellular, mitochondrion	31.82	5.07
CDX97874	Canola	extracellular	59.09	4.85
CDY60955	Canola	cytosol, extracellular, plastid, vacuole	63.64	4.56
CDY15324	Canola	cytosol	77.27	4.44
CDY15333	Canola	mitochondrion	77.27	4.43
CDY19132	Canola	mitochondrion	77.27	4.33
CDY51358	Canola	cytosol	72.73	4.23
CDY19134	Canola	mitochondrion	72.73	4.19
CDY15327	Canola	cytosol	72.73	4.16
CDY15359	Canola	cytosol, plastid	72.73	4.02
CDY15352	Canola	mitochondrion	72.73	3.96
CDY15332	Canola	cytosol	68.18	3.85
CDY15336	Canola	plastid	68.18	3.83
CDY60961	Canola	cytosol	68.18	3.78
CDY19137	Canola	cytosol, mitochondrion, plastid	68.18	3.69
CDY70684	Canola	cytosol	31.82	3.41
CDY15353	Canola	cytosol	77.27	3.3
CDY12239	Canola	mitochondrion	36.36	2.87
CDY66546	Canola	cytosol	31.82	2.8
AT3G23960.1	Thale cress	cytosol	50.0	2.74
CDY67625	Canola	mitochondrion	31.82	2.72
CDY65288	Canola	mitochondrion	31.82	2.54
CDX79454	Canola	cytosol	31.82	2.33
CDY42089	Canola	cytosol	40.91	2.21
CDY12626	Canola	cytosol	36.36	2.14
CDY67859	Canola	cytosol, mitochondrion	36.36	2.12
CDY29942	Canola	cytosol	27.27	2.02
CDY19088	Canola	cytosol	36.36	1.98
CDY42088	Canola	cytosol	36.36	1.96
CDX79453	Canola	plastid	31.82	1.84
CDY31173	Canola	cytosol, mitochondrion	31.82	1.76
CDX83262	Canola	cytosol, mitochondrion	31.82	1.76
CDY12627	Canola	cytosol	31.82	1.76
CDY67066	Canola	cytosol, mitochondrion, nucleus, peroxisome	31.82	1.73
CDY42091	Canola	mitochondrion	22.73	1.62
CDY08200	Canola	cytosol, golgi, mitochondrion, plasma membrane	31.82	1.58
CDY12260	Canola	cytosol	22.73	1.57
CDY10678	Canola	cytosol	27.27	1.55
CDY12259	Canola	cytosol	22.73	1.54
CDX70134	Canola	cytosol	27.27	1.52
CDX98860	Canola	cytosol	27.27	1.49
CDY08136	Canola	cytosol	27.27	1.48
CDY05937	Canola	cytosol	22.73	1.48
CDY08137	Canola	cytosol	27.27	1.47
CDY72410	Canola	cytosol	22.73	1.35
CDY72470	Canola	golgi, nucleus, plasma membrane	22.73	1.29
CDY29771	Canola	cytosol, plastid	18.18	1.2
CDY19131	Canola	mitochondrion	31.82	1.18
CDY26564	Canola	mitochondrion	22.73	1.09
CDY19127	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	27.27	1.04
CDY29772	Canola	cytosol	18.18	0.98
CDY15999	Canola	cytosol, mitochondrion	27.27	0.93
CDY15344	Canola	mitochondrion	9.09	0.58
CDY15342	Canola	cytosol	4.55	0.44
CDY66545	Canola	cytosol, peroxisome, plastid	0.0	0.0
CDY65287	Canola	cytosol	0.0	0.0
CDY15357	Canola	cytosol, nucleus, plastid	0.0	0.0
CDY15358	Canola	cytosol, extracellular, plastid	0.0	0.0
CDY00206	Canola	nucleus	0.0	0.0
CDY71858	Canola	cytosol, mitochondrion, nucleus, plastid	0.0	0.0
CDY52273	Canola	cytosol, plastid	0.0	0.0
CDY30661	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDY52272	EnsemblPlantsGene:GSBRNA2T00005259001	ProteinID:CDY52272	ProteinID:CDY52272.1	UniParc:UPI0004EDBBC6	UniProt:A0A078IQR2
MapMan:35.2	:	:	:	:	:

Description

BnaC05g52160DBnaC05g52160D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IQR2]

Coordinates

chrLK033072:-:59724..59792

Molecular Weight (calculated)

2663.2 Da

IEP (calculated)

6.519

GRAVY (calculated)

0.023

Length

22 amino acids

Sequence
(BLAST)

1: MEAFQGKRFN TYLNYVENVI LL

Best Arabidopsis Sequence Match ( AT5G65850.1 )
(BLAST)

001: MRTLRRNVTE NRLTISRRRT EKKTSPNKTE KSVQIPVDII IEILLRLPAK SIATCRCVSK LWISVICRQD FTELFLTRSL HRPQLLFCCK KDGNLFFFSS
101: PQLQNPYENS SAISLKNFSL CYKISRPVNG LICFKRKEMN ETVTVICNPS TGHTLSLPKP MKTSIGPSRF FVYEPIQKQF KVLLSYKSDE HQVLTLGTGE
201: LSWRIIECSM PHILGMSEIC INGVLYYPAI NLSSGDYIIV CFDVRSEKFR FITVMEEFIK AAHDGTLINY NGKLASLVSE RYCFVDGRSK SIELWVLQDA
301: EKKEWSKHTY VLPAWWQHRI GTLNLRFVGV TRTNEIMLSP CYQTVPFDVY YFNIERKTMM SVAIQGMEAF QGHLVFTYLD HVENVKLLHN MF

Arabidopsis Description

F-box protein At5g65850 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHP3]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.