CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY65287	Canola	cytosol	13.01	46.39
CDY15358	Canola	cytosol, extracellular, plastid	17.92	44.29
CDY71858	Canola	cytosol, mitochondrion, nucleus, plastid	15.32	42.06
CDY15357	Canola	cytosol, nucleus, plastid	6.65	41.82
CDY00206	Canola	nucleus	21.68	41.44
CDY29771	Canola	cytosol, plastid	38.73	40.24
CDY19127	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	66.47	40.0
CDY42088	Canola	cytosol	46.53	39.36
CDY72470	Canola	golgi, nucleus, plasma membrane	43.06	38.3
AT2G19630.1	Thale cress	cytosol, nucleus, plasma membrane	32.66	38.05
CDY66546	Canola	cytosol	27.46	38.0
CDY15324	Canola	cytosol	41.91	37.86
CDY15332	Canola	cytosol	42.2	37.44
CDY52273	Canola	cytosol, plastid	31.79	36.91
CDX98860	Canola	cytosol	43.06	36.88
CDX70134	Canola	cytosol	41.91	36.8
CDY66545	Canola	cytosol, peroxisome, plastid	39.02	36.78
CDY29772	Canola	cytosol	43.06	36.52
CDY15336	Canola	plastid	41.33	36.48
CDY60961	Canola	cytosol	41.33	36.02
CDY19137	Canola	cytosol, mitochondrion, plastid	42.2	35.96
CDY15359	Canola	cytosol, plastid	41.33	35.93
CDY15327	Canola	cytosol	39.88	35.84
CDY12627	Canola	cytosol	41.04	35.68
CDY15352	Canola	mitochondrion	41.33	35.4
CDX79454	Canola	cytosol	30.64	35.22
CDY60955	Canola	cytosol, extracellular, plastid, vacuole	31.21	35.18
CDY42089	Canola	cytosol	40.75	34.56
CDY19134	Canola	mitochondrion	37.86	34.29
CDY12239	Canola	mitochondrion	27.46	34.05
CDY12626	Canola	cytosol	36.71	33.96
CDY31173	Canola	cytosol, mitochondrion	39.02	33.92
CDY15333	Canola	mitochondrion	37.57	33.85
CDY67625	Canola	mitochondrion	25.14	33.85
CDY67066	Canola	cytosol, mitochondrion, nucleus, peroxisome	39.6	33.83
CDX83262	Canola	cytosol, mitochondrion	38.73	33.67
CDY30661	Canola	cytosol	22.54	33.62
CDY67859	Canola	cytosol, mitochondrion	36.71	33.6
CDX79453	Canola	plastid	36.71	33.42
CDY19088	Canola	cytosol	39.02	33.33
CDY19132	Canola	mitochondrion	37.57	33.08
CDY51358	Canola	cytosol	36.13	33.07
CDY42091	Canola	mitochondrion	29.48	33.01
CDX97551	Canola	mitochondrion	36.71	32.4
CDY60959	Canola	cytosol, mitochondrion, plastid	25.72	32.13
CDY08137	Canola	cytosol	37.86	32.11
CDY05937	Canola	cytosol	30.64	31.36
CDY10678	Canola	cytosol	34.68	31.09
CDY08136	Canola	cytosol	36.13	30.86
CDY65288	Canola	mitochondrion	24.57	30.8
CDY72410	Canola	cytosol	32.37	30.19
CDY18160	Canola	cytosol	13.87	26.97
CDY08200	Canola	cytosol, golgi, mitochondrion, plasma membrane	34.39	26.92
CDY70684	Canola	cytosol	15.32	25.85
CDX97874	Canola	extracellular	19.36	25.0
CDY29942	Canola	cytosol	21.1	24.58
CDY12259	Canola	cytosol	22.83	24.38
CDY19131	Canola	mitochondrion	41.91	24.37
CDY12260	Canola	cytosol	21.68	23.51
CDY15326	Canola	cytosol	8.38	22.66
CDY70182	Canola	extracellular	8.67	22.06
CDY46037	Canola	extracellular	8.67	22.06
CDY42092	Canola	cytosol	8.67	21.28
CDY15353	Canola	cytosol	30.35	20.39
CDY30662	Canola	extracellular, mitochondrion	6.94	17.39
CDY26564	Canola	mitochondrion	22.83	17.25
CDY15999	Canola	cytosol, mitochondrion	26.59	14.29
CDY52272	Canola	cytosol	0.58	9.09
CDY15342	Canola	cytosol	4.62	7.02

Protein Annotations

Gene3D:1.20.1280.50	MapMan:35.1	GO:A0A078FR33	UniProt:A0A078FR33	EnsemblPlants:CDY15344	ProteinID:CDY15344
ProteinID:CDY15344.1	InterPro:F-box-assoc_dom_typ3	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSBRNA2T00085627001
InterPro:IPR001810	PFAM:PF00646	PFAM:PF08268	PANTHER:PTHR31790	PANTHER:PTHR31790:SF10	SMART:SM00256
SUPFAM:SSF81383	TIGRFAMs:TIGR01640	TMHMM:TMhelix	UniParc:UPI0004EE57DF	SEG:seg	:

Description

BnaC04g42790DBnaC04g42790D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FR33]

Coordinates

chrLK032054:+:173480..174559

Molecular Weight (calculated)

39567.7 Da

IEP (calculated)

8.833

GRAVY (calculated)

-0.147

Length

346 amino acids

Sequence
(BLAST)

001: MKTRRRNLSG DRLTTTTRRN TRSKTSENGR GNSLPFPIDL IMEIFSRLPV KSIAICRCVS KTWASVLRRQ DFTELFLSRS RTLPKLLLAY QKDGDLFFYS
101: APQPQNPDEN SSSVVATYHM KFSFEADFLG DAFEISGLDQ GLYSAPVICN PSTGQLLPLP RVKTRRVKSM SLFGYDPIDK QVKVLSMSGS YGSSIPVAEE
201: YQIMTLGTGK LSQRMIDCGR ILRYYPHFEG ICINGVLYYL SVDISTASYL LVCFDVRSEK FSFIEVEKFL FDGTMVNYNG KLGFLLSGES DYVDESSTSV
301: NLWVLEDTHK QEWSERTFVL PALYITNTYI YIYIYIYIIL KSKYKL

Best Arabidopsis Sequence Match ( AT1G46984.1 )
(BLAST)

001: MNRRKNDFLV RPKRIRCYTQ LSTLPIDLII EILSRLPMNS IAICRLVSKQ WASILQSSDF TESFLIKSPP RPRLLFTIRY GSKWHLFSAP QPRNFDENFP
101: VVATDYHKGF SGNWCMQSFQ LVNGFIYLNN RLSLKGKIDR VSVIWNPSTG QQIPLPDLGV KNSHSKSFFG YDPIEKQFKV LCITSSKEHQ VLTLGTGRKL
201: SWRKIEYSYP HYPRKKSNGI CINGVLYYRN TNAMIVRFDV RSEEFRFVEI KMYVEILSLI NYKGKLGVLF PNTDLAQLWV LDDTNKVEWS KHNFVFPDTT
301: FEAIRATDTG EMFCASSCWR DSLYVSYYDL EKESVKKVKI KGIEDKLSIG KHHANEFFIF PNHVENVMVL

Arabidopsis Description

Putative F-box protein At1g46984 [Source:UniProtKB/Swiss-Prot;Acc:Q9C627]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.