Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX70134 | Canola | cytosol | 75.74 | 77.67 |
| CDY66546 | Canola | cytosol | 34.65 | 56.0 |
| AT2G31470.1 | Thale cress | cytosol | 51.24 | 53.49 |
| CDY65288 | Canola | mitochondrion | 36.39 | 53.26 |
| CDY67066 | Canola | cytosol, mitochondrion, nucleus, peroxisome | 49.26 | 49.14 |
| CDY19088 | Canola | cytosol | 48.51 | 48.4 |
| CDY66545 | Canola | cytosol, peroxisome, plastid | 43.32 | 47.68 |
| CDY12239 | Canola | mitochondrion | 32.67 | 47.31 |
| CDX79454 | Canola | cytosol | 33.42 | 44.85 |
| CDY60955 | Canola | cytosol, extracellular, plastid, vacuole | 33.66 | 44.3 |
| CDY15332 | Canola | cytosol | 42.57 | 44.1 |
| CDY15357 | Canola | cytosol, nucleus, plastid | 5.94 | 43.64 |
| CDY52273 | Canola | cytosol, plastid | 31.93 | 43.29 |
| CDY42088 | Canola | cytosol | 43.81 | 43.28 |
| CDY42092 | Canola | cytosol | 15.1 | 43.26 |
| CDY15352 | Canola | mitochondrion | 43.07 | 43.07 |
| CDY15344 | Canola | mitochondrion | 36.88 | 43.06 |
| CDY19134 | Canola | mitochondrion | 40.35 | 42.67 |
| CDX79453 | Canola | plastid | 40.1 | 42.63 |
| CDY19137 | Canola | cytosol, mitochondrion, plastid | 42.82 | 42.61 |
| CDY60961 | Canola | cytosol | 41.83 | 42.57 |
| CDY15324 | Canola | cytosol | 40.35 | 42.56 |
| CDY15359 | Canola | cytosol, plastid | 41.83 | 42.46 |
| CDY42091 | Canola | mitochondrion | 32.43 | 42.39 |
| CDY65287 | Canola | cytosol | 10.15 | 42.27 |
| CDY15336 | Canola | plastid | 40.84 | 42.09 |
| CDY71858 | Canola | cytosol, mitochondrion, nucleus, plastid | 13.12 | 42.06 |
| CDY67625 | Canola | mitochondrion | 26.73 | 42.02 |
| CDY00206 | Canola | nucleus | 18.81 | 41.99 |
| CDY46037 | Canola | extracellular | 14.11 | 41.91 |
| CDY70182 | Canola | extracellular | 14.11 | 41.91 |
| CDY42089 | Canola | cytosol | 42.08 | 41.67 |
| CDY15327 | Canola | cytosol | 39.6 | 41.56 |
| CDY12626 | Canola | cytosol | 38.37 | 41.44 |
| CDY15333 | Canola | mitochondrion | 39.36 | 41.41 |
| CDY70684 | Canola | cytosol | 20.79 | 40.98 |
| CDY15358 | Canola | cytosol, extracellular, plastid | 14.11 | 40.71 |
| CDY12627 | Canola | cytosol | 40.1 | 40.7 |
| CDY72410 | Canola | cytosol | 37.38 | 40.7 |
| CDX97551 | Canola | mitochondrion | 39.36 | 40.56 |
| CDY29772 | Canola | cytosol | 40.84 | 40.44 |
| CDY72470 | Canola | golgi, nucleus, plasma membrane | 38.86 | 40.36 |
| CDY29771 | Canola | cytosol, plastid | 33.17 | 40.24 |
| CDY67859 | Canola | cytosol, mitochondrion | 37.62 | 40.21 |
| CDY60959 | Canola | cytosol, mitochondrion, plastid | 27.48 | 40.07 |
| CDY19132 | Canola | mitochondrion | 38.61 | 39.69 |
| CDY15326 | Canola | cytosol | 12.38 | 39.06 |
| CDY51358 | Canola | cytosol | 36.39 | 38.89 |
| CDX83262 | Canola | cytosol, mitochondrion | 38.12 | 38.69 |
| CDY08136 | Canola | cytosol | 38.61 | 38.52 |
| CDY31173 | Canola | cytosol, mitochondrion | 37.87 | 38.44 |
| CDY08137 | Canola | cytosol | 37.87 | 37.5 |
| CDY10678 | Canola | cytosol | 35.4 | 37.05 |
| CDY05937 | Canola | cytosol | 30.94 | 36.98 |
| CDY30662 | Canola | extracellular, mitochondrion | 12.62 | 36.96 |
| CDY18160 | Canola | cytosol | 15.84 | 35.96 |
| CDY30661 | Canola | cytosol | 20.54 | 35.78 |
| CDY29942 | Canola | cytosol | 25.99 | 35.35 |
| CDY08200 | Canola | cytosol, golgi, mitochondrion, plasma membrane | 37.62 | 34.39 |
| CDX97874 | Canola | extracellular | 22.77 | 34.33 |
| CDY12259 | Canola | cytosol | 25.0 | 31.17 |
| CDY12260 | Canola | cytosol | 24.01 | 30.41 |
| CDY19127 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 39.85 | 28.0 |
| CDY19131 | Canola | mitochondrion | 40.59 | 27.56 |
| CDY52272 | Canola | cytosol | 1.49 | 27.27 |
| CDY15353 | Canola | cytosol | 34.16 | 26.8 |
| CDY26564 | Canola | mitochondrion | 23.27 | 20.52 |
| CDY15999 | Canola | cytosol, mitochondrion | 25.74 | 16.15 |
| CDY15342 | Canola | cytosol | 6.93 | 12.28 |
Protein Annotations
| Gene3D:1.20.1280.50 | MapMan:35.1 | EnsemblPlants:CDX98860 | ProteinID:CDX98860 | ProteinID:CDX98860.1 | InterPro:F-box-assoc_dom_typ3 |
| InterPro:F-box-assoc_interact_dom | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| EnsemblPlantsGene:GSBRNA2T00106962001 | InterPro:IPR001810 | PFAM:PF00646 | PFAM:PF08268 | PANTHER:PTHR31790 | PANTHER:PTHR31790:SF47 |
| SMART:SM00256 | SUPFAM:SSF81383 | TIGRFAMs:TIGR01640 | UniParc:UPI0004EE397A | : | : |
Description
BnaC09g49750D
Coordinates
chrLK031907:+:314975..320693
Molecular Weight (calculated)
46764.4 Da
IEP (calculated)
9.459
GRAVY (calculated)
-0.260
Length
404 amino acids
Sequence
(BLAST)
(BLAST)
001: MRTRRQKILE DRQTVVGRLY AGENSLTIPD DLIFEIFSRL PAKSIPRCRC LSKLWASILV RQDFTEQYVK RSSARPQLLF AFQEYGEVFF FSAPQNQEDD
101: NSSPITASYH MSFPVSRVRE IYSPISGLVC VKDERILKGM KTPVTVWMIC NPSTGQSFTL PRIKTRKKRS SVRSFFGYDP VEKQFKVLSM TFANLAIYKE
201: HQVLTLQTGK LSWRMIECDV PHHHGINSIC INGVLYYKAK NGADSSTYGK DIIVTFDVRS EKFGFIEVDK PFIPVHTLIN FNGKLASLES YSFNRRSPIH
301: LWVLDDIEKN EWSKHVYKLP ASWEDVVGDA DLYCVKVTAS NEVVLSGYYQ RSPFYVFYYS LEKETVRRVE IQGMEAFKRF QVYTFVDHVE DVKRMKGVLG
401: LALK
101: NSSPITASYH MSFPVSRVRE IYSPISGLVC VKDERILKGM KTPVTVWMIC NPSTGQSFTL PRIKTRKKRS SVRSFFGYDP VEKQFKVLSM TFANLAIYKE
201: HQVLTLQTGK LSWRMIECDV PHHHGINSIC INGVLYYKAK NGADSSTYGK DIIVTFDVRS EKFGFIEVDK PFIPVHTLIN FNGKLASLES YSFNRRSPIH
301: LWVLDDIEKN EWSKHVYKLP ASWEDVVGDA DLYCVKVTAS NEVVLSGYYQ RSPFYVFYYS LEKETVRRVE IQGMEAFKRF QVYTFVDHVE DVKRMKGVLG
401: LALK
001: MKSRRQNVSV ARQTILGRDE NFEPIPIDLV IEIFSRSPVK SIARCRCVSK LWASILRLPY FTELYLTKSC ARPRLLFACQ KHRELFFFST PQPHNPNESS
101: SPLAASFHMK IPFDGRFNII SPIGGLVFVR YEQILKGRKT PEFVSAICNP STGQSLTLPK PKTRKRIWGT SHFGYDPIEK QFKVLSMNIG DGVYKEHYVL
201: TLGTENLSWR RIECSIPHVH GSKGICINGV LYYRAKADMF SGTLMIVCFD VRFEKFSYIK ILKPTTTLIS YNGKLASLVW EGPSYICGKR FEMWVLGDPE
301: KHEWLKHTYE LRPRWQNVLG EDLLIFAGMT GTNEIVLSPK YPSHPFYVFY YNLERNTIRR VEIQGMGAFK VNEDYIFLDH VEDVKLI
101: SPLAASFHMK IPFDGRFNII SPIGGLVFVR YEQILKGRKT PEFVSAICNP STGQSLTLPK PKTRKRIWGT SHFGYDPIEK QFKVLSMNIG DGVYKEHYVL
201: TLGTENLSWR RIECSIPHVH GSKGICINGV LYYRAKADMF SGTLMIVCFD VRFEKFSYIK ILKPTTTLIS YNGKLASLVW EGPSYICGKR FEMWVLGDPE
301: KHEWLKHTYE LRPRWQNVLG EDLLIFAGMT GTNEIVLSPK YPSHPFYVFY YNLERNTIRR VEIQGMGAFK VNEDYIFLDH VEDVKLI
Arabidopsis Description
DORF-box protein DOR [Source:UniProtKB/Swiss-Prot;Acc:Q5BPS3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.