Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 1
- mitochondrion 1
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY15326 | Canola | cytosol | 47.27 | 20.31 |
| CDY18160 | Canola | cytosol | 58.18 | 17.98 |
| CDY70182 | Canola | extracellular | 43.64 | 17.65 |
| CDY46037 | Canola | extracellular | 43.64 | 17.65 |
| CDY30662 | Canola | extracellular, mitochondrion | 40.0 | 15.94 |
| CDY42092 | Canola | cytosol | 32.73 | 12.77 |
| CDY60955 | Canola | cytosol, extracellular, plastid, vacuole | 70.91 | 12.7 |
| CDX97874 | Canola | extracellular | 54.55 | 11.19 |
| CDY52273 | Canola | cytosol, plastid | 58.18 | 10.74 |
| CDY70684 | Canola | cytosol | 32.73 | 8.78 |
| CDY65288 | Canola | mitochondrion | 41.82 | 8.33 |
| CDY67625 | Canola | mitochondrion | 38.18 | 8.17 |
| CDX97551 | Canola | mitochondrion | 58.18 | 8.16 |
| CDY42091 | Canola | mitochondrion | 45.45 | 8.09 |
| CDY60961 | Canola | cytosol | 58.18 | 8.06 |
| CDY15359 | Canola | cytosol, plastid | 58.18 | 8.04 |
| CDY15332 | Canola | cytosol | 56.36 | 7.95 |
| CDY15336 | Canola | plastid | 56.36 | 7.91 |
| CDY51358 | Canola | cytosol | 52.73 | 7.67 |
| CDY15324 | Canola | cytosol | 52.73 | 7.57 |
| CDY15327 | Canola | cytosol | 52.73 | 7.53 |
| CDY12239 | Canola | mitochondrion | 38.18 | 7.53 |
| CDY15333 | Canola | mitochondrion | 50.91 | 7.29 |
| AT3G23960.1 | Thale cress | cytosol | 52.73 | 7.21 |
| CDY15352 | Canola | mitochondrion | 52.73 | 7.18 |
| CDY19134 | Canola | mitochondrion | 49.09 | 7.07 |
| CDX79454 | Canola | cytosol | 38.18 | 6.98 |
| CDY19137 | Canola | cytosol, mitochondrion, plastid | 50.91 | 6.9 |
| CDY15344 | Canola | mitochondrion | 41.82 | 6.65 |
| CDY29771 | Canola | cytosol, plastid | 40.0 | 6.61 |
| CDY66545 | Canola | cytosol, peroxisome, plastid | 43.64 | 6.54 |
| CDY12627 | Canola | cytosol | 47.27 | 6.53 |
| CDY12626 | Canola | cytosol | 43.64 | 6.42 |
| CDY42089 | Canola | cytosol | 47.27 | 6.37 |
| CDY19132 | Canola | mitochondrion | 45.45 | 6.36 |
| CDY67859 | Canola | cytosol, mitochondrion | 41.82 | 6.08 |
| CDY29942 | Canola | cytosol | 32.73 | 6.06 |
| CDX98860 | Canola | cytosol | 43.64 | 5.94 |
| CDY19088 | Canola | cytosol | 43.64 | 5.93 |
| CDY05937 | Canola | cytosol | 36.36 | 5.92 |
| CDX70134 | Canola | cytosol | 41.82 | 5.84 |
| CDY08137 | Canola | cytosol | 41.82 | 5.64 |
| CDY15353 | Canola | cytosol | 50.91 | 5.44 |
| CDY67066 | Canola | cytosol, mitochondrion, nucleus, peroxisome | 40.0 | 5.43 |
| CDY42088 | Canola | cytosol | 40.0 | 5.38 |
| CDY19131 | Canola | mitochondrion | 58.18 | 5.38 |
| CDY08200 | Canola | cytosol, golgi, mitochondrion, plasma membrane | 41.82 | 5.2 |
| CDY72470 | Canola | golgi, nucleus, plasma membrane | 36.36 | 5.14 |
| CDX83262 | Canola | cytosol, mitochondrion | 36.36 | 5.03 |
| CDY08136 | Canola | cytosol | 36.36 | 4.94 |
| CDY72410 | Canola | cytosol | 32.73 | 4.85 |
| CDY31173 | Canola | cytosol, mitochondrion | 34.55 | 4.77 |
| CDY29772 | Canola | cytosol | 34.55 | 4.66 |
| CDY19127 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 45.45 | 4.35 |
| CDY10678 | Canola | cytosol | 29.09 | 4.15 |
| CDY26564 | Canola | mitochondrion | 27.27 | 3.28 |
| CDY71858 | Canola | cytosol, mitochondrion, nucleus, plastid | 7.27 | 3.17 |
| CDY15999 | Canola | cytosol, mitochondrion | 27.27 | 2.33 |
| CDY15342 | Canola | cytosol | 7.27 | 1.75 |
| CDY66546 | Canola | cytosol | 5.45 | 1.2 |
| CDY60959 | Canola | cytosol, mitochondrion, plastid | 5.45 | 1.08 |
| CDY65287 | Canola | cytosol | 1.82 | 1.03 |
| CDY15358 | Canola | cytosol, extracellular, plastid | 1.82 | 0.71 |
| CDY00206 | Canola | nucleus | 1.82 | 0.55 |
| CDY30661 | Canola | cytosol | 1.82 | 0.43 |
| CDY12260 | Canola | cytosol | 1.82 | 0.31 |
| CDY12259 | Canola | cytosol | 1.82 | 0.31 |
| CDX79453 | Canola | plastid | 1.82 | 0.26 |
| CDY52272 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY15357 | EnsemblPlantsGene:GSBRNA2T00085645001 | InterPro:F-box-assoc_dom_typ3 | PFAM:PF08268 | ProteinID:CDY15357 | ProteinID:CDY15357.1 |
| UniParc:UPI0004EEF007 | UniProt:A0A078FR69 | MapMan:35.2 | : | : | : |
Description
BnaC04g42660DBnaC04g42660D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FR69]
Coordinates
chrLK032054:-:249215..249382
Molecular Weight (calculated)
6021.0 Da
IEP (calculated)
4.242
GRAVY (calculated)
-0.380
Length
55 amino acids
Sequence
(BLAST)
(BLAST)
1: MPVSTTLINY NDKLGLLMSG DSDDNSGYGC ICGESKSLEL WVLQDAGKNE WSKHV
001: MIECCKPHVP RGTEICINSV LYYTAVEKGS LMVTIVVCFD ISSEKFSFMK VMETFDRDLP SSTTMINYNG KLGLLMTEES TDIVSGTSKS FELRVLEDAE
101: KHDWSKHVYM LPPLWKNVVG EETKLRLLGM VGSCTNEIVF SYKYPSTFMP SYVFYYNIER NTIIRLEIQG MEELNGK
101: KHDWSKHVYM LPPLWKNVVG EETKLRLLGM VGSCTNEIVF SYKYPSTFMP SYVFYYNIER NTIIRLEIQG MEELNGK
Arabidopsis Description
F-box associated ubiquitination effector family protein [Source:UniProtKB/TrEMBL;Acc:Q9SRL0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.