CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26564	Canola	mitochondrion	55.9	78.6
CDY65287	Canola	cytosol	4.66	30.93
CDY52273	Canola	cytosol, plastid	13.51	29.19
CDY66545	Canola	cytosol, peroxisome, plastid	16.61	29.16
CDY15332	Canola	cytosol	17.24	28.46
CDY15324	Canola	cytosol	16.46	27.68
CDY19137	Canola	cytosol, mitochondrion, plastid	17.39	27.59
CDY60955	Canola	cytosol, extracellular, plastid, vacuole	13.04	27.36
CDY15326	Canola	cytosol	5.43	27.34
CDX97551	Canola	mitochondrion	16.61	27.3
CDY15357	Canola	cytosol, nucleus, plastid	2.33	27.27
CDY52272	Canola	cytosol	0.93	27.27
CDY51358	Canola	cytosol	15.84	26.98
CDY15336	Canola	plastid	16.3	26.79
CDY15344	Canola	mitochondrion	14.29	26.59
CDX79454	Canola	cytosol	12.42	26.58
CDY42089	Canola	cytosol	16.77	26.47
CDY65288	Canola	mitochondrion	11.34	26.45
CDY19134	Canola	mitochondrion	15.68	26.44
CDY66546	Canola	cytosol	10.25	26.4
CDY15327	Canola	cytosol	15.68	26.23
CDY12239	Canola	mitochondrion	11.34	26.16
CDY15352	Canola	mitochondrion	16.3	25.99
CDY10678	Canola	cytosol	15.53	25.91
CDY12627	Canola	cytosol	15.99	25.88
CDX98860	Canola	cytosol	16.15	25.74
CDY05937	Canola	cytosol	13.51	25.74
CDY70182	Canola	extracellular	5.43	25.74
CDY46037	Canola	extracellular	5.43	25.74
CDY60961	Canola	cytosol	15.84	25.69
CDY15359	Canola	cytosol, plastid	15.84	25.63
CDY42091	Canola	mitochondrion	12.27	25.57
CDY29771	Canola	cytosol, plastid	13.2	25.53
CDY15333	Canola	mitochondrion	15.22	25.52
CDY19132	Canola	mitochondrion	15.53	25.45
CDY19088	Canola	cytosol	15.99	25.43
CDY42088	Canola	cytosol	16.15	25.43
CDY67066	Canola	cytosol, mitochondrion, nucleus, peroxisome	15.84	25.19
CDY67859	Canola	cytosol, mitochondrion	14.75	25.13
CDY31173	Canola	cytosol, mitochondrion	15.53	25.13
CDY72470	Canola	golgi, nucleus, plasma membrane	14.91	24.68
CDX83262	Canola	cytosol, mitochondrion	15.22	24.62
CDY12626	Canola	cytosol	14.29	24.6
CDY60959	Canola	cytosol, mitochondrion, plastid	10.56	24.55
CDY70684	Canola	cytosol	7.76	24.39
CDX70134	Canola	cytosol	14.91	24.37
CDY00206	Canola	nucleus	6.83	24.31
CDY15358	Canola	cytosol, extracellular, plastid	5.28	24.29
CDY67625	Canola	mitochondrion	9.63	24.12
CDY29772	Canola	cytosol	15.22	24.02
CDX97874	Canola	extracellular	9.94	23.88
CDY30661	Canola	cytosol	8.54	23.71
CDY08136	Canola	cytosol	14.91	23.7
CDY08137	Canola	cytosol	14.91	23.53
CDX79453	Canola	plastid	13.82	23.42
CDY72410	Canola	cytosol	13.35	23.18
CDY18160	Canola	cytosol	6.37	23.03
CDY29942	Canola	cytosol	9.94	21.55
CDY08200	Canola	cytosol, golgi, mitochondrion, plasma membrane	14.75	21.49
CDY42092	Canola	cytosol	4.66	21.28
CDY19127	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	18.48	20.7
CDY71858	Canola	cytosol, mitochondrion, nucleus, plastid	4.04	20.63
CDY30662	Canola	extracellular, mitochondrion	4.35	20.29
CDY19131	Canola	mitochondrion	18.01	19.5
CDY12259	Canola	cytosol	9.01	17.9
CDY15353	Canola	cytosol	14.13	17.67
CDY12260	Canola	cytosol	8.23	16.61
CDY15342	Canola	cytosol	3.11	8.77

Protein Annotations

Gene3D:1.20.1280.50	Gene3D:2.60.40.200	Gene3D:3.30.710.10	MapMan:35.1	GO:A0A078FSV9	UniProt:A0A078FSV9
EnsemblPlants:CDY15999	ProteinID:CDY15999	ProteinID:CDY15999.1	ncoils:Coil	InterPro:F-box-assoc_dom_typ3	InterPro:F-box-assoc_interact_dom
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006511
GO:GO:0006801	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538
GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00090385001	InterPro:IPR001810	InterPro:IPR036423	PFAM:PF00646	PFAM:PF03931
PFAM:PF08268	PANTHER:PTHR31790	PANTHER:PTHR31790:SF10	MetaCyc:PWY-6854	InterPro:SKP1/BTB/POZ_sf	SMART:SM00256
InterPro:SOD-like_Cu/Zn_dom_sf	SUPFAM:SSF49329	SUPFAM:SSF54695	SUPFAM:SSF81383	InterPro:Skp1_comp_POZ	TIGRFAMs:TIGR01640
UniParc:UPI0004EEF519	SEG:seg	:	:	:	:

Description

BnaC08g41240DBnaC08g41240D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FSV9]

Coordinates

chrLK032060:+:153660..157311

Molecular Weight (calculated)

72812.0 Da

IEP (calculated)

5.493

GRAVY (calculated)

-0.095

Length

644 amino acids

Sequence
(BLAST)

001: MAKKKTVRLR SSRGKIYEID EVVASQSKLI ANYCEGGDIL IEDVEDEILD LVIDYCKNHA RASSEMDLKS SGFTPDEKEA VWIRNAWAEA GDEEGDDDND
101: ILFDGIRLGG DLMPDSMIEQ ILTRMPAKSI AMCRCVSKTW ASIISRPSFT ALFSSRTRTH LLFVCTLDWP SRRYHHGNIL TSPLPRTREI FGYFLDVNHQ
201: TELRHKVGDQ TFTYVNGLVF DMQPSFCGIH NPSTGMSFTV RNSEVVRGSI GAQSYFGYDP ISKTFKILAM TTADLISRNH CCHTVRAGER YSWRSISCGI
301: EHFPMKWKPV CIAGHIFYPA ASRSDAPISM VIDFDLNAEE FSSINYFDIQ ASSEAILFDY NGSLASFVLL EHLVSFALWV LEDRVKQIWV KHIHVIPNLP
401: LDFSGYGFKF VGVIHTNETV WLQSTEIVGP SWSLPTGMFF NTDTKTVKEI SFNPFDKSKR KRFGVSVGHI EYMRNPWEEY EAVALLKSSE DEEEGVKGNI
501: RFIQEGEECP TTMTLTVYGL KPGTYSISVN DVVLKTFDVA LKTFDVHQNI PFTIEIIDDN QIPLAGEKSI FDKSVSIVTD GGHVVSKEYL SKKSEVDSCF
601: VPVSFLLNQL NICVQQKYNT LSLVFFVVFL TGMIYKVNDG MFLL

Best Arabidopsis Sequence Match ( AT5G65850.1 )
(BLAST)

001: MRTLRRNVTE NRLTISRRRT EKKTSPNKTE KSVQIPVDII IEILLRLPAK SIATCRCVSK LWISVICRQD FTELFLTRSL HRPQLLFCCK KDGNLFFFSS
101: PQLQNPYENS SAISLKNFSL CYKISRPVNG LICFKRKEMN ETVTVICNPS TGHTLSLPKP MKTSIGPSRF FVYEPIQKQF KVLLSYKSDE HQVLTLGTGE
201: LSWRIIECSM PHILGMSEIC INGVLYYPAI NLSSGDYIIV CFDVRSEKFR FITVMEEFIK AAHDGTLINY NGKLASLVSE RYCFVDGRSK SIELWVLQDA
301: EKKEWSKHTY VLPAWWQHRI GTLNLRFVGV TRTNEIMLSP CYQTVPFDVY YFNIERKTMM SVAIQGMEAF QGHLVFTYLD HVENVKLLHN MF

Arabidopsis Description

F-box protein At5g65850 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHP3]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.