CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra022876.1-P	Field mustard	cytosol	30.26	74.19
CDY42088	Canola	cytosol	51.84	48.17
CDY65287	Canola	cytosol	11.32	44.33
CDY66546	Canola	cytosol	27.63	42.0
CDX70134	Canola	cytosol	41.58	40.1
CDX98860	Canola	cytosol	42.63	40.1
CDY12627	Canola	cytosol	41.84	39.95
CDY12626	Canola	cytosol	37.37	37.97
CDY65288	Canola	mitochondrion	27.11	37.32
CDX79454	Canola	cytosol	29.47	37.21
CDY15344	Canola	mitochondrion	33.42	36.71
CDY67859	Canola	cytosol, mitochondrion	36.05	36.24
CDY67066	Canola	cytosol, mitochondrion, nucleus, peroxisome	38.42	36.05
CDY30661	Canola	cytosol	21.84	35.78
CDY19088	Canola	cytosol	37.89	35.56
CDY15359	Canola	cytosol, plastid	37.11	35.43
CDY15332	Canola	cytosol	36.32	35.38
CDY60959	Canola	cytosol, mitochondrion, plastid	25.79	35.38
CDY29772	Canola	cytosol	37.89	35.29
CDY60961	Canola	cytosol	36.84	35.26
CDY15324	Canola	cytosol	35.53	35.25
CDY19137	Canola	cytosol, mitochondrion, plastid	37.11	34.73
CDY19134	Canola	mitochondrion	34.74	34.55
CDY42089	Canola	cytosol	36.84	34.31
CDY60955	Canola	cytosol, extracellular, plastid, vacuole	27.63	34.2
CDY66545	Canola	cytosol, peroxisome, plastid	32.63	33.79
CDY15327	Canola	cytosol	34.21	33.77
CDY12239	Canola	mitochondrion	24.74	33.69
CDY31173	Canola	cytosol, mitochondrion	35.26	33.67
CDY29771	Canola	cytosol, plastid	29.47	33.63
CDX83262	Canola	cytosol, mitochondrion	34.74	33.17
CDY00206	Canola	nucleus	15.79	33.15
CDY67625	Canola	mitochondrion	22.37	33.07
CDY15333	Canola	mitochondrion	33.16	32.81
CDY15352	Canola	mitochondrion	34.74	32.67
CDY08137	Canola	cytosol	35.0	32.6
CDY15336	Canola	plastid	33.42	32.4
CDY72470	Canola	golgi, nucleus, plasma membrane	33.16	32.39
CDY52273	Canola	cytosol, plastid	25.26	32.21
CDY08136	Canola	cytosol	34.21	32.1
CDY05937	Canola	cytosol	28.42	31.95
CDX97551	Canola	mitochondrion	32.89	31.89
CDY52272	Canola	cytosol	1.84	31.82
CDY72410	Canola	cytosol	31.05	31.81
CDY12259	Canola	cytosol	27.11	31.79
CDY46037	Canola	extracellular	11.32	31.62
CDY70182	Canola	extracellular	11.32	31.62
CDY15358	Canola	cytosol, extracellular, plastid	11.58	31.43
CDY19132	Canola	mitochondrion	32.37	31.3
CDY42091	Canola	mitochondrion	25.26	31.07
CDY12260	Canola	cytosol	26.05	31.03
CDY71858	Canola	cytosol, mitochondrion, nucleus, plastid	10.26	30.95
CDY10678	Canola	cytosol	31.32	30.83
CDY70684	Canola	cytosol	16.58	30.73
CDY51358	Canola	cytosol	30.53	30.69
CDY08200	Canola	cytosol, golgi, mitochondrion, plasma membrane	32.63	28.05
CDY29942	Canola	cytosol	21.84	27.95
CDY19127	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	38.95	25.74
CDX97874	Canola	extracellular	17.63	25.0
CDY18160	Canola	cytosol	11.58	24.72
CDY15326	Canola	cytosol	7.89	23.44
CDY42092	Canola	cytosol	8.68	23.4
CDY19131	Canola	mitochondrion	33.42	21.34
CDY15353	Canola	cytosol	27.11	20.0
CDY30662	Canola	extracellular, mitochondrion	6.32	17.39
CDY26564	Canola	mitochondrion	18.68	15.5
CDY15999	Canola	cytosol, mitochondrion	23.42	13.82
CDY15342	Canola	cytosol	5.53	9.21
CDY15357	Canola	cytosol, nucleus, plastid	0.26	1.82

Protein Annotations

EnsemblPlants:CDX79453	EnsemblPlantsGene:GSBRNA2T00132186001	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-assoc_dom_typ3	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR31790
PANTHER:PTHR31790:SF47	PFAM:PF00646	PFAM:PF08268	ProteinID:CDX79453	ProteinID:CDX79453.1	SEG:seg
SMART:SM00256	SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI0004EDBCF4	MapMan:35.1	:

Description

BnaC03g17890D

Coordinates

chrLK031818:+:123986..125324

Molecular Weight (calculated)

42956.0 Da

IEP (calculated)

9.230

GRAVY (calculated)

-0.137

Length

380 amino acids

Sequence
(BLAST)

001: MLKTWPIIIV STRPDPSPLG FKATISAMKS RRLNLSVESS ISAISRCSSR SPTSTNGGEN SEPIPADLIF ELLLRLPAKS IARCRCVSSL WSSILIRPDF
101: TELFFTRSSS LPQLLLSRQE NDELLFFTAP QAVHTSSIIS PNHHKKIPFL STSQICGHLR GLICLTHQRT VKKRKETVPV MFNPSTGESL ELPKVKTSMV
201: MVRSFFAYDP VAKQFKVLSM SWPCYKSGWI CKDHQVLTLG NGNLAWRMVE CGIPHHPTYD GICINGCLYY QAIVDRGSGV SAIICFDVRS EKFSFIRKAQ
301: DRDELTGETG EAQLYYIGMS GNNEVLLSPR YPSSPFYVFY YNFERGTIRR VEIQRMDALK HGRIHTFLDH VEDVKLYANV

Best Arabidopsis Sequence Match ( AT1G53790.1 )
(BLAST)

001: MVRDIVDDPL DEDDIALVKT YGLVPYSAPI KKVEKEIKEL TEKINDLCGI KESDTGLAPL SKQMMQEGQP LQVGYVSCFR YIPIDLLMDI FSRVPAKSIA
101: RFRCVSKLWE SILCRPDFKE LFMTMSSIRP PLLLFTFQDD DGNLFFFSSP HPQIPCNENT SLVPTRYHVQ HTTDSFSEIG SPLCGFICRR GKRNLDTMVI
201: CNPVTGESVS LPKVELKSIN TETRPYLGYD PVRKQLKVLC IKSDDIPNTC DEHQVLTLEN GNHLWRTIQC KPHYPKSDGI CIDGILYYTA GFDMRARVSM
301: VVCFDVRSEK FSFINIHVFM LMNDSCTLIN YKGKLGALQF TCLSPKRLRF WVLVNAEKNI WTKCIYALPP LWNNLVQHTE LAIVGMTDGG EVVLSQYCLI
401: YAFYIYYFNL ESKSLTRVQI QDVEMFKRTR VYTSLGYVEN FKLM

Arabidopsis Description

F-box and associated interaction domains-containing protein [Source:UniProtKB/TrEMBL;Acc:B3H7F2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.