CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY05937	Canola	cytosol	67.39	73.96
CDY08136	Canola	cytosol	76.01	69.63
CDY67625	Canola	mitochondrion	45.55	65.76
CDY08137	Canola	cytosol	63.61	57.84
AT3G49450.1	Thale cress	cytosol	47.17	43.75
CDY70182	Canola	extracellular	14.82	40.44
CDY46037	Canola	extracellular	14.82	40.44
CDY70684	Canola	cytosol	21.56	39.02
CDY65288	Canola	mitochondrion	28.3	38.04
CDX98860	Canola	cytosol	40.7	37.38
CDY12626	Canola	cytosol	36.39	36.1
CDY31173	Canola	cytosol, mitochondrion	38.01	35.43
CDY12627	Canola	cytosol	38.01	35.43
CDY66546	Canola	cytosol	23.72	35.2
CDY15326	Canola	cytosol	12.13	35.16
CDY19088	Canola	cytosol	38.27	35.06
CDY65287	Canola	cytosol	9.16	35.05
CDY67859	Canola	cytosol, mitochondrion	35.58	34.92
CDY67066	Canola	cytosol, mitochondrion, nucleus, peroxisome	38.01	34.81
CDY12239	Canola	mitochondrion	26.15	34.77
CDX79454	Canola	cytosol	28.03	34.55
CDX83262	Canola	cytosol, mitochondrion	36.93	34.42
CDX70134	Canola	cytosol	36.39	34.26
CDY00206	Canola	nucleus	16.71	34.25
CDY60955	Canola	cytosol, extracellular, plastid, vacuole	28.3	34.2
CDY42091	Canola	mitochondrion	28.3	33.98
CDY42088	Canola	cytosol	37.2	33.74
CDY18160	Canola	cytosol	16.17	33.71
CDY15324	Canola	cytosol	34.5	33.42
CDY42089	Canola	cytosol	36.66	33.33
CDY42092	Canola	cytosol	12.67	33.33
CDY60961	Canola	cytosol	35.58	33.25
CDY19134	Canola	mitochondrion	34.23	33.25
CDY52273	Canola	cytosol, plastid	26.68	33.22
CDY15359	Canola	cytosol, plastid	35.31	32.91
CDY15357	Canola	cytosol, nucleus, plastid	4.85	32.73
CDY29942	Canola	cytosol	26.15	32.66
CDY15332	Canola	cytosol	34.23	32.56
CDY15327	Canola	cytosol	33.69	32.47
CDY66545	Canola	cytosol, peroxisome, plastid	32.08	32.43
CDY15344	Canola	mitochondrion	30.19	32.37
CDY19132	Canola	mitochondrion	34.23	32.32
CDY15333	Canola	mitochondrion	33.42	32.29
CDY72470	Canola	golgi, nucleus, plasma membrane	33.69	32.13
CDY15336	Canola	plastid	33.69	31.89
CDY30662	Canola	extracellular, mitochondrion	11.86	31.88
CDY29771	Canola	cytosol, plastid	28.3	31.53
CDY10678	Canola	cytosol	32.61	31.35
CDY19137	Canola	cytosol, mitochondrion, plastid	34.23	31.28
CDX79453	Canola	plastid	31.81	31.05
CDX97874	Canola	extracellular	22.37	30.97
CDY15352	Canola	mitochondrion	33.42	30.69
CDY29772	Canola	cytosol	33.15	30.15
CDX97551	Canola	mitochondrion	31.81	30.1
CDY51358	Canola	cytosol	29.92	29.37
CDY71858	Canola	cytosol, mitochondrion, nucleus, plastid	9.7	28.57
CDY08200	Canola	cytosol, golgi, mitochondrion, plasma membrane	33.42	28.05
CDY30661	Canola	cytosol	17.52	28.02
CDY15358	Canola	cytosol, extracellular, plastid	10.51	27.86
CDY60959	Canola	cytosol, mitochondrion, plastid	20.49	27.44
CDY12260	Canola	cytosol	22.91	26.65
CDY12259	Canola	cytosol	22.1	25.31
CDY52272	Canola	cytosol	1.35	22.73
CDY15353	Canola	cytosol	30.46	21.94
CDY19127	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	32.08	20.7
CDY19131	Canola	mitochondrion	32.61	20.34
CDY26564	Canola	mitochondrion	18.6	15.07
CDY15999	Canola	cytosol, mitochondrion	23.18	13.35
CDY15342	Canola	cytosol	7.28	11.84

Protein Annotations

MapMan:35.1	GO:A0A078K133	UniProt:A0A078K133	EnsemblPlants:CDY72410	ProteinID:CDY72410	ProteinID:CDY72410.1
InterPro:F-box-assoc_dom_typ3	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSBRNA2T00028462001	InterPro:Gal_Oxase/kelch_b-propeller
InterPro:IPR001810	PFAM:PF00646	PFAM:PF08268	PANTHER:PTHR31790	PANTHER:PTHR31790:SF10	SMART:SM00256
SUPFAM:SSF50965	SUPFAM:SSF81383	TIGRFAMs:TIGR01640	TMHMM:TMhelix	UniParc:UPI0004EDF857	SEG:seg

Description

BnaAnng41050DBnaAnng41050D protein [Source:UniProtKB/TrEMBL;Acc:A0A078K133]

Coordinates

chrLK050836:-:113..1337

Molecular Weight (calculated)

42046.4 Da

IEP (calculated)

9.137

GRAVY (calculated)

-0.061

Length

371 amino acids

Sequence
(BLAST)

001: MKKQKQCVSK EETRIISSTT STKASGENSG QIPIDIILEI LSRVPAKSIA RFRCASKDWG VTLCRPYFTD QFIKMSSLSP CLLFTFHAED RKSSRVAVHR
101: LSHIPIDYPI RVCVPACGLL CTKDEWDLSG KKDARMMICN PSTGGFKLLP KVKTKRRRVL TYLGYDPVEK VLTLGTGNMN WRMIECSVSH CPQSKDNEIC
201: IGGVLYYLAV GSGSWETSMP MIVCFDIRSE KFKFIVDEAF KDINYPSSLI NYKGKLGILH PNSDFMAGRS SGFVLWVIDD IENHTWRKNI IILPSLWWSL
301: VAGTRFHIVG TTGDSEIMFS PSVVSSILFY IFCYNMETKS MRRVEIQGLG PVKDQKIYTF LNHIENVKLV T

Best Arabidopsis Sequence Match ( AT3G49450.1 )
(BLAST)

001: MSAMMKKRKR KVSKENVALT ISSSVGEYGE NSGTLPTDLM VEILSRVPAK SAARFRCVSN DWNSLLRSPY LTNLFLKRSS ARPHLLITFQ AEGKWSFFSS
101: PEYLISDQNS NLVVVDNHMD VPKDYSFGVC VPVCGLMCTS NEWVLSRKRD ARMMICNPST GQFKSLPKVR SCRGNVITYI GYNPIEKQYK VLCMTIREKP
201: FKFKAEEHQV LTLGTGKLKW RMLECSVDHY PYYHGSICIN GVLFYLAMKS ESKEYMTVSF HMKDENFMFI PNQDLLSTLI NYKGRLGGIR HKSFGFMDGG
301: DVGFELWILD VVNQEWIRSI HVLPPMWKDV VGETRVYFVG IIGSCEVVFS PFVKSNPFYI FHLDMKSNSI TRVEIKGTGP LEGQAVYTFV NHIENVNLIM

Arabidopsis Description

F-box and associated interaction domains-containing protein [Source:TAIR;Acc:AT3G49450]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.