CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, nucleus, plasma membrane

Predictor Summary:

plastid 1
plasma membrane 1
mitochondrion 1
nucleus 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, nucleus, plasma membrane
Any Predictor:	golgi, plasma membrane, plastid
BaCelLo:	plastid
MultiLoc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX79454	Canola	cytosol	46.53	60.13
CDY12239	Canola	mitochondrion	35.73	49.82
CDY42091	Canola	mitochondrion	37.79	47.57
CDY42092	Canola	cytosol	16.2	44.68
CDY15344	Canola	mitochondrion	38.3	43.06
CDY60955	Canola	cytosol, extracellular, plastid, vacuole	33.42	42.35
CDY65287	Canola	cytosol	10.03	40.21
CDY15358	Canola	cytosol, extracellular, plastid	14.4	40.0
CDY42089	Canola	cytosol	41.9	39.95
CDY60961	Canola	cytosol	40.36	39.55
CDY15327	Canola	cytosol	39.07	39.48
CDY29771	Canola	cytosol, plastid	33.68	39.34
CDY18160	Canola	cytosol	17.99	39.33
CDY67066	Canola	cytosol, mitochondrion, nucleus, peroxisome	40.62	39.01
CDY29772	Canola	cytosol	40.87	38.97
CDY15359	Canola	cytosol, plastid	39.85	38.94
CDY52273	Canola	cytosol, plastid	29.82	38.93
CDX98860	Canola	cytosol	40.36	38.86
CDY19088	Canola	cytosol	40.36	38.77
CDY15332	Canola	cytosol	38.82	38.72
CDY12627	Canola	cytosol	39.59	38.69
CDY15352	Canola	mitochondrion	40.1	38.61
CDX70134	Canola	cytosol	39.07	38.58
CDY19134	Canola	mitochondrion	37.79	38.48
CDY15324	Canola	cytosol	37.79	38.38
CDY15326	Canola	cytosol	12.6	38.28
CDY15336	Canola	plastid	38.56	38.27
CDX97551	Canola	mitochondrion	38.3	38.01
CDY19137	Canola	cytosol, mitochondrion, plastid	39.59	37.93
CDY66546	Canola	cytosol	24.16	37.6
CDY70182	Canola	extracellular	13.11	37.5
CDY46037	Canola	extracellular	13.11	37.5
CDY42088	Canola	cytosol	39.07	37.16
CDY19132	Canola	mitochondrion	37.53	37.15
CDY00206	Canola	nucleus	17.22	37.02
CDY15333	Canola	mitochondrion	36.5	36.98
CDY65288	Canola	mitochondrion	26.22	36.96
CDY66545	Canola	cytosol, peroxisome, plastid	34.7	36.78
CDY12626	Canola	cytosol	34.96	36.36
CDY15357	Canola	cytosol, nucleus, plastid	5.14	36.36
CDY30661	Canola	cytosol	21.59	36.21
CDY67859	Canola	cytosol, mitochondrion	34.96	35.98
CDY67625	Canola	mitochondrion	23.65	35.8
CDY51358	Canola	cytosol	33.93	34.92
CDY60959	Canola	cytosol, mitochondrion, plastid	24.68	34.66
CDY08137	Canola	cytosol	35.99	34.31
CDY71858	Canola	cytosol, mitochondrion, nucleus, plastid	11.05	34.13
CDY72410	Canola	cytosol	32.13	33.69
CDY08136	Canola	cytosol	34.96	33.58
CDY31173	Canola	cytosol, mitochondrion	34.19	33.42
CDX97874	Canola	extracellular	22.88	33.21
CDX79453	Canola	plastid	32.39	33.16
CDY05937	Canola	cytosol	28.79	33.14
CDX83262	Canola	cytosol, mitochondrion	33.68	32.91
CDY08200	Canola	cytosol, golgi, mitochondrion, plasma membrane	36.76	32.35
CDY10678	Canola	cytosol	30.85	31.09
CDY70684	Canola	cytosol	15.68	29.76
CDY30662	Canola	extracellular, mitochondrion	10.54	29.71
CDY19127	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	41.39	28.0
CDY12260	Canola	cytosol	22.36	27.27
CDY12259	Canola	cytosol	22.62	27.16
CDY29942	Canola	cytosol	20.31	26.6
CDY19131	Canola	mitochondrion	38.56	25.21
CDY15353	Canola	cytosol	32.9	24.85
CDY52272	Canola	cytosol	1.29	22.73
CDY26564	Canola	mitochondrion	22.62	19.21
CDY15999	Canola	cytosol, mitochondrion	24.68	14.91
CDY15342	Canola	cytosol	7.71	13.16

Protein Annotations

Gene3D:1.20.1280.50	MapMan:35.1	UniProt:A0A078K166	EnsemblPlants:CDY72470	ProteinID:CDY72470	ProteinID:CDY72470.1
InterPro:F-box-assoc_dom_typ3	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00029928001	InterPro:IPR001810	PFAM:PF00646	PFAM:PF08268	PANTHER:PTHR31790
PANTHER:PTHR31790:SF47	SMART:SM00256	SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI0004EDEFC9	:

Description

BnaCnng77820DBnaCnng77820D protein [Source:UniProtKB/TrEMBL;Acc:A0A078K166]

Coordinates

chrLK051220:-:721..1890

Molecular Weight (calculated)

44228.5 Da

IEP (calculated)

8.104

GRAVY (calculated)

-0.036

Length

389 amino acids

Sequence
(BLAST)

001: MELQLNRRSK ILLNGRENLP IDLVMEILSR LPLKSIGRCC CVSKLWASIL GLPYFLDLFA TRSSARPHML FACRRDGKVL FFSAPQPQNF DVNSSSDVTA
101: NYLSRVSYDG SYCYISGPVH GLVCLTFKDN KESSKGHIIC NPSTGQTLTL PQLESMVGVR SPYKAISLLW YDPTDKKGKV LFMEEDVDHS ISLVVLKHKV
201: MTLGTQKLEW RRTKCCIPHY SYVKGICING VLYYRSVRAY THDSVIVCFD ARSEEFSFIE VETTFKVPLI CGQYINYNGK FGLLLSQGWD YADEASSSFE
301: LVVIGDSENQ EWSTRKYVLP PTWKNMVKEK LGFVGFIGTH TIVLTHPSSY IIYYNIEKNT IVKVSIQGLD GFKCFEVLTF VDYVEDLRA

Best Arabidopsis Sequence Match ( AT1G30920.1 )
(BLAST)

001: MNSEENTDSI PIDLILDILS RLPSKSIARC RCVSKLWESM IRQSYFTELF LTRSSSRPHL LIAVEQEGEW KFFSLPQPKN YLGKSSLVVA ANLHLKFFED
101: KRPQHGCSYA SSLIYFPNMT IRKKGDDHLG VICNPSTGQY GYVILPPLLD FKSVPYGKFL GFDPIDKQFK VLIPIFDFDK HQTDHHILTL GAETVGWRKI
201: QSPLRYLPHS NGTICINGIL YYLAKINYAM DKNVLVCFDV RSENFVFLRL NTYCSSTKLV NYKGKLGMIN QEYVDDGGFP LKLSVWVLED VGKEEWSTYV
301: YTLRDDNKVD QVKYNLSVVG VTASGEIVLV KKTQTLKPFY VLYFNPDKNT LLTVEVKGLH RGLYAVHRIY AFVDHVEDLE FNIMKTTYAA KSKFSQEDRF

Arabidopsis Description

Putative F-box protein At1g30920 [Source:UniProtKB/Swiss-Prot;Acc:P0C2G2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.