CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra027364.1-P	Field mustard	mitochondrion	97.7	97.7
CDY52272	Canola	cytosol	5.36	95.45
CDY52273	Canola	cytosol, plastid	67.09	88.25
CDY71858	Canola	cytosol, mitochondrion, nucleus, plastid	21.43	66.67
CDY15332	Canola	cytosol	63.27	63.59
CDY15326	Canola	cytosol	20.66	63.28
CDY15336	Canola	plastid	63.27	63.27
CDY15324	Canola	cytosol	59.95	61.36
CDY19134	Canola	mitochondrion	59.18	60.73
CDY15352	Canola	mitochondrion	62.24	60.4
CDY19137	Canola	cytosol, mitochondrion, plastid	61.73	59.61
CDY15333	Canola	mitochondrion	57.91	59.11
CDY15359	Canola	cytosol, plastid	59.69	58.79
CDY60961	Canola	cytosol	59.18	58.44
CDY15357	Canola	cytosol, nucleus, plastid	8.16	58.18
CDY60959	Canola	cytosol, mitochondrion, plastid	41.07	58.12
CDY15327	Canola	cytosol	56.89	57.92
CDY60955	Canola	cytosol, extracellular, plastid, vacuole	45.15	57.65
CDY51358	Canola	cytosol	53.32	55.29
CDY19132	Canola	mitochondrion	54.85	54.71
CDY18160	Canola	cytosol	24.74	54.49
CDY15358	Canola	cytosol, extracellular, plastid	17.6	49.29
CDX97874	Canola	extracellular	32.91	48.13
AT3G23960.1	Thale cress	cytosol	45.41	44.28
CDY46037	Canola	extracellular	15.31	44.12
CDY70182	Canola	extracellular	15.31	44.12
CDX79454	Canola	cytosol	32.4	42.19
CDY19131	Canola	mitochondrion	63.27	41.68
CDY67066	Canola	cytosol, mitochondrion, nucleus, peroxisome	42.35	40.99
CDY19088	Canola	cytosol	42.09	40.74
CDY12239	Canola	mitochondrion	28.83	40.5
CDX98860	Canola	cytosol	40.56	39.36
CDY66546	Canola	cytosol	25.0	39.2
CDY65287	Canola	cytosol	9.69	39.18
CDY65288	Canola	mitochondrion	27.55	39.13
CDY12626	Canola	cytosol	37.24	39.04
CDY42092	Canola	cytosol	14.03	39.01
CDY42089	Canola	cytosol	40.56	38.97
CDY12627	Canola	cytosol	39.29	38.69
CDY67859	Canola	cytosol, mitochondrion	37.24	38.62
CDY29771	Canola	cytosol, plastid	32.65	38.44
CDY72470	Canola	golgi, nucleus, plasma membrane	38.01	38.3
CDY66545	Canola	cytosol, peroxisome, plastid	35.71	38.15
CDX70134	Canola	cytosol	38.01	37.82
CDY15344	Canola	mitochondrion	32.4	36.71
CDY42091	Canola	mitochondrion	28.57	36.25
CDY70684	Canola	cytosol	18.88	36.1
CDY67625	Canola	mitochondrion	23.47	35.8
CDY42088	Canola	cytosol	37.24	35.7
CDY31173	Canola	cytosol, mitochondrion	35.97	35.43
CDX83262	Canola	cytosol, mitochondrion	35.2	34.67
CDY15353	Canola	cytosol	45.15	34.37
CDY00206	Canola	nucleus	15.56	33.7
CDY29772	Canola	cytosol	34.69	33.33
CDY30662	Canola	extracellular, mitochondrion	11.73	33.33
CDY05937	Canola	cytosol	28.57	33.14
CDX79453	Canola	plastid	31.89	32.89
CDY10678	Canola	cytosol	32.14	32.64
CDY08137	Canola	cytosol	33.67	32.35
CDY08136	Canola	cytosol	32.91	31.85
CDY72410	Canola	cytosol	30.1	31.81
CDY30661	Canola	cytosol	18.62	31.47
CDY29942	Canola	cytosol	22.7	29.97
CDY08200	Canola	cytosol, golgi, mitochondrion, plasma membrane	33.67	29.86
CDY19127	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	39.54	26.96
CDY12259	Canola	cytosol	21.17	25.62
CDY12260	Canola	cytosol	20.66	25.39
CDY26564	Canola	mitochondrion	23.98	20.52
CDY15999	Canola	cytosol, mitochondrion	27.3	16.61
CDY15342	Canola	cytosol	7.65	13.16

Protein Annotations

Gene3D:1.20.1280.50	MapMan:35.1	EnsemblPlants:CDX97551	ProteinID:CDX97551	ProteinID:CDX97551.1	InterPro:F-box-assoc_dom_typ3
InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSBRNA2T00104762001	InterPro:IPR001810	PFAM:PF08268	PFAM:PF12937	PANTHER:PTHR31790	PANTHER:PTHR31790:SF47
SMART:SM00256	SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI0004EE23AD	SEG:seg	:

Description

BnaA05g25280D

Coordinates

chrLK031900:-:249614..250934

Molecular Weight (calculated)

44294.2 Da

IEP (calculated)

9.833

GRAVY (calculated)

-0.187

Length

392 amino acids

Sequence
(BLAST)

001: MTLQRAATRS MTSLHRNSLP IPDELAVEIF SRLPSKDIAR CRCACKLWSS MLLREDFTDL FLTKSSARPQ LLFACQDHNH NYIFFSSSPH PEKEENSSYV
101: VVAANHNLAR FPSSSYKLFG FTNGFCYGAR PRSRKPVICN PSTGQSLTLP RLKSRKWFGV VERRGQDSPL VNNYLGYDPV SKEFKVLSME RSKISAKHQV
201: LTLGIKKLSW RLVQCTTAHY SSNKWISISG VIYYAASANR SSANSMVACF DMRVEKFSFV NFGRTMHDST TLVNYNGKLG LLMSGDAPGE NISTTSKSFQ
301: LWVLQDAEWS KHVYILPPSW NDVVTKTMCF AGIIVGTNEI VLAPSLQNVP SYVIYFNVER NTITKVGIQG MEAFQGKRFN TYLNYVENVI LL

Best Arabidopsis Sequence Match ( AT1G53790.1 )
(BLAST)

001: MVRDIVDDPL DEDDIALVKT YGLVPYSAPI KKVEKEIKEL TEKINDLCGI KESDTGLAPL SKQMMQEGQP LQVGYVSCFR YIPIDLLMDI FSRVPAKSIA
101: RFRCVSKLWE SILCRPDFKE LFMTMSSIRP PLLLFTFQDD DGNLFFFSSP HPQIPCNENT SLVPTRYHVQ HTTDSFSEIG SPLCGFICRR GKRNLDTMVI
201: CNPVTGESVS LPKVELKSIN TETRPYLGYD PVRKQLKVLC IKSDDIPNTC DEHQVLTLEN GNHLWRTIQC KPHYPKSDGI CIDGILYYTA GFDMRARVSM
301: VVCFDVRSEK FSFINIHVFM LMNDSCTLIN YKGKLGALQF TCLSPKRLRF WVLVNAEKNI WTKCIYALPP LWNNLVQHTE LAIVGMTDGG EVVLSQYCLI
401: YAFYIYYFNL ESKSLTRVQI QDVEMFKRTR VYTSLGYVEN FKLM

Arabidopsis Description

F-box and associated interaction domains-containing protein [Source:UniProtKB/TrEMBL;Acc:B3H7F2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.