CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra033908.1-P	Field mustard	cytosol	98.96	98.96
CDY70684	Canola	cytosol	29.27	55.12
CDY31173	Canola	cytosol, mitochondrion	54.92	53.27
CDX83262	Canola	cytosol, mitochondrion	54.92	53.27
CDY29942	Canola	cytosol	34.97	45.45
CDY66546	Canola	cytosol	25.65	39.6
CDY65287	Canola	cytosol	9.59	38.14
CDY00206	Canola	nucleus	17.36	37.02
CDX70134	Canola	cytosol	37.31	36.55
CDY12626	Canola	cytosol	34.72	35.83
CDY19088	Canola	cytosol	37.56	35.8
CDY12259	Canola	cytosol	30.05	35.8
CDY67625	Canola	mitochondrion	23.83	35.8
CDY67859	Canola	cytosol, mitochondrion	34.97	35.71
CDY12627	Canola	cytosol	36.79	35.68
CDY67066	Canola	cytosol, mitochondrion, nucleus, peroxisome	37.31	35.56
CDY66545	Canola	cytosol, peroxisome, plastid	33.68	35.42
CDX98860	Canola	cytosol	37.05	35.4
CDY05937	Canola	cytosol	30.83	35.21
CDY65288	Canola	mitochondrion	25.13	35.14
CDY42088	Canola	cytosol	36.79	34.72
CDY15344	Canola	mitochondrion	31.09	34.68
CDY42089	Canola	cytosol	36.53	34.56
CDY30661	Canola	cytosol	20.73	34.48
CDY19134	Canola	mitochondrion	33.94	34.29
CDY12260	Canola	cytosol	28.24	34.17
CDY15327	Canola	cytosol	33.42	33.51
CDY29771	Canola	cytosol, plastid	28.76	33.33
CDY08137	Canola	cytosol	35.23	33.33
CDY15358	Canola	cytosol, extracellular, plastid	11.92	32.86
CDY08136	Canola	cytosol	34.46	32.84
CDY72410	Canola	cytosol	31.35	32.61
CDY15333	Canola	mitochondrion	32.38	32.55
CDY15332	Canola	cytosol	32.64	32.31
CDX97551	Canola	mitochondrion	32.64	32.14
CDY29772	Canola	cytosol	33.94	32.11
CDY15359	Canola	cytosol, plastid	32.9	31.91
CDY60961	Canola	cytosol	32.64	31.74
CDY15336	Canola	plastid	32.12	31.63
CDY19137	Canola	cytosol, mitochondrion, plastid	33.16	31.53
CDX79453	Canola	plastid	30.83	31.32
CDY60955	Canola	cytosol, extracellular, plastid, vacuole	24.87	31.27
CDY52273	Canola	cytosol, plastid	24.09	31.21
CDY15324	Canola	cytosol	30.83	31.07
CDY19132	Canola	mitochondrion	31.61	31.04
CDY72470	Canola	golgi, nucleus, plasma membrane	31.09	30.85
CDY51358	Canola	cytosol	30.05	30.69
CDX79454	Canola	cytosol	23.58	30.23
CDY12239	Canola	mitochondrion	21.76	30.11
CDY42091	Canola	mitochondrion	24.09	30.1
CDY15352	Canola	mitochondrion	30.83	29.46
CDY70182	Canola	extracellular	10.36	29.41
CDY46037	Canola	extracellular	10.36	29.41
CDY60959	Canola	cytosol, mitochondrion, plastid	20.98	29.24
CDY15357	Canola	cytosol, nucleus, plastid	4.15	29.09
CDY08200	Canola	cytosol, golgi, mitochondrion, plasma membrane	32.38	28.28
CDY71858	Canola	cytosol, mitochondrion, nucleus, plastid	9.07	27.78
CDY52272	Canola	cytosol	1.55	27.27
CDX97874	Canola	extracellular	17.88	25.75
CDY18160	Canola	cytosol	11.4	24.72
CDY15326	Canola	cytosol	8.03	24.22
CDY30662	Canola	extracellular, mitochondrion	8.29	23.19
CDY19127	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	32.12	21.57
CDY42092	Canola	cytosol	7.77	21.28
CDY19131	Canola	mitochondrion	32.38	21.01
CDY26564	Canola	mitochondrion	22.28	18.78
CDY15353	Canola	cytosol	24.87	18.64
CDY15999	Canola	cytosol, mitochondrion	25.91	15.53
CDY15342	Canola	cytosol	5.7	9.65

Protein Annotations

EnsemblPlants:CDY10678	EnsemblPlantsGene:GSBRNA2T00048445001	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-assoc_dom_typ3	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR31790
PANTHER:PTHR31790:SF10	PFAM:PF00646	PFAM:PF08268	PFscan:PS50181	ProteinID:CDY10678	ProteinID:CDY10678.1
SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI0004EE3D5E	UniProt:A0A078FF10	MapMan:35.1	:

Description

BnaA05g16840DBnaA05g16840D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FF10]

Coordinates

chrLK032005:-:611980..613140

Molecular Weight (calculated)

44062.3 Da

IEP (calculated)

8.590

GRAVY (calculated)

-0.229

Length

386 amino acids

Sequence
(BLAST)

001: MDGPGNSRLK IVSLDTELSI ETIPNELIIE ILSRVPAKSI ATCRRVLKEW KSLLLTPAFT DSFLTISSAQ PRILLTFKCS GKWHFCTAPQ PQHLDEELSV
101: VEADYHMRLN GGSGPESCLS VQGFTCLIDR PKIMGKYERV PVICNPSTGQ HLTLPKVKAK NSDLRTFFGY DPIKKQFKVL CMTVTNYRKQ VNSKEHQVLT
201: KEKGRLSWRK IICLFPHYPE RERDGICING IVYYIARWDK TCLIASFDVG SEEFRLINMP EGSNLTYISA LVNFKGKLCA VVVYSGSHGE LWVLDDTQKE
301: KWSKHSFDSP NTDFEEVKST WATDTGEIAW VLSRWKNPFH VFFYNLDSKS VRRVEIKGID DKVLLGKDRV IQHLSVTSYV ENVMIL

Best Arabidopsis Sequence Match ( AT1G46984.1 )
(BLAST)

001: MNRRKNDFLV RPKRIRCYTQ LSTLPIDLII EILSRLPMNS IAICRLVSKQ WASILQSSDF TESFLIKSPP RPRLLFTIRY GSKWHLFSAP QPRNFDENFP
101: VVATDYHKGF SGNWCMQSFQ LVNGFIYLNN RLSLKGKIDR VSVIWNPSTG QQIPLPDLGV KNSHSKSFFG YDPIEKQFKV LCITSSKEHQ VLTLGTGRKL
201: SWRKIEYSYP HYPRKKSNGI CINGVLYYRN TNAMIVRFDV RSEEFRFVEI KMYVEILSLI NYKGKLGVLF PNTDLAQLWV LDDTNKVEWS KHNFVFPDTT
301: FEAIRATDTG EMFCASSCWR DSLYVSYYDL EKESVKKVKI KGIEDKLSIG KHHANEFFIF PNHVENVMVL

Arabidopsis Description

Putative F-box protein At1g46984 [Source:UniProtKB/Swiss-Prot;Acc:Q9C627]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.