CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plastid, mitochondrion

Predictor Summary:

plastid 2
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15326	Canola	cytosol	27.83	88.28
CDY15332	Canola	cytosol	81.53	84.87
CDY15352	Canola	mitochondrion	81.53	81.93
CDY60959	Canola	cytosol, mitochondrion, plastid	55.66	81.59
CDY15324	Canola	cytosol	76.11	80.68
Bra021789.1-P	Field mustard	cytosol	92.61	73.73
CDY15336	Canola	plastid	70.44	72.96
CDY52272	Canola	cytosol	3.69	68.18
CDY15359	Canola	cytosol, plastid	62.56	63.82
CDY15327	Canola	cytosol	60.34	63.64
CDY60961	Canola	cytosol	61.58	62.97
CDY19134	Canola	mitochondrion	58.62	62.3
CDY60955	Canola	cytosol, extracellular, plastid, vacuole	47.04	62.22
CDX97551	Canola	mitochondrion	59.61	61.73
CDY15333	Canola	mitochondrion	58.13	61.46
CDY19132	Canola	mitochondrion	58.87	60.81
CDY52273	Canola	cytosol, plastid	44.34	60.4
CDY51358	Canola	cytosol	54.93	58.99
CDY18160	Canola	cytosol	25.37	57.87
CDY15358	Canola	cytosol, extracellular, plastid	19.7	57.14
CDY71858	Canola	cytosol, mitochondrion, nucleus, plastid	17.73	57.14
CDY15357	Canola	cytosol, nucleus, plastid	6.9	50.91
CDX97874	Canola	extracellular	33.5	50.75
CDY19131	Canola	mitochondrion	72.91	49.75
AT3G23960.1	Thale cress	cytosol	47.29	47.76
CDY46037	Canola	extracellular	15.52	46.32
CDY70182	Canola	extracellular	15.52	46.32
CDX79454	Canola	cytosol	32.51	43.85
CDY66546	Canola	cytosol	26.6	43.2
CDX98860	Canola	cytosol	42.61	42.82
CDY67066	Canola	cytosol, mitochondrion, nucleus, peroxisome	42.61	42.72
CDY19088	Canola	cytosol	42.36	42.47
CDY15344	Canola	mitochondrion	35.96	42.2
CDY42089	Canola	cytosol	42.36	42.16
CDY12239	Canola	mitochondrion	28.82	41.94
CDY65288	Canola	mitochondrion	28.33	41.67
CDY67625	Canola	mitochondrion	26.35	41.63
CDX70134	Canola	cytosol	40.15	41.37
CDY65287	Canola	cytosol	9.85	41.24
CDY66545	Canola	cytosol, peroxisome, plastid	36.7	40.6
CDY29771	Canola	cytosol, plastid	33.25	40.54
CDY72470	Canola	golgi, nucleus, plasma membrane	37.93	39.59
CDY12627	Canola	cytosol	38.67	39.45
CDY42088	Canola	cytosol	39.66	39.36
CDY12626	Canola	cytosol	35.96	39.04
CDY67859	Canola	cytosol, mitochondrion	35.96	38.62
CDY42092	Canola	cytosol	13.3	38.3
CDY42091	Canola	mitochondrion	28.82	37.86
CDX79453	Canola	plastid	34.73	37.11
CDY08137	Canola	cytosol	36.95	36.76
CDY31173	Canola	cytosol, mitochondrion	35.96	36.68
CDX83262	Canola	cytosol, mitochondrion	35.22	35.93
CDY29772	Canola	cytosol	35.96	35.78
CDY15353	Canola	cytosol	45.32	35.73
CDY00206	Canola	nucleus	15.76	35.36
CDY70684	Canola	cytosol	17.73	35.12
CDY30661	Canola	cytosol	19.95	34.91
CDY05937	Canola	cytosol	28.82	34.62
CDY72410	Canola	cytosol	31.28	34.23
CDY08136	Canola	cytosol	33.74	33.83
CDY10678	Canola	cytosol	31.53	33.16
CDY30662	Canola	extracellular, mitochondrion	10.84	31.88
CDY08200	Canola	cytosol, golgi, mitochondrion, plasma membrane	33.74	31.0
CDY29942	Canola	cytosol	22.66	30.98
CDY19127	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	43.1	30.43
CDY12259	Canola	cytosol	22.66	28.4
CDY12260	Canola	cytosol	22.17	28.21
CDY26564	Canola	mitochondrion	22.91	20.31
CDY15999	Canola	cytosol, mitochondrion	27.59	17.39
CDY15342	Canola	cytosol	7.88	14.04

Protein Annotations

MapMan:35.1	UniProt:A0A078G2B1	EnsemblPlants:CDY19137	ProteinID:CDY19137	ProteinID:CDY19137.1	InterPro:F-box-assoc_dom_typ3
InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSBRNA2T00006420001	InterPro:IPR001810	PFAM:PF00646	PFAM:PF08268	PANTHER:PTHR31790	PANTHER:PTHR31790:SF47
SMART:SM00256	SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI0004EEDC96	:	:

Description

BnaA04g18770DBnaA04g18770D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G2B1]

Coordinates

chrLK032092:-:446121..447673

Molecular Weight (calculated)

46013.1 Da

IEP (calculated)

9.427

GRAVY (calculated)

-0.270

Length

406 amino acids

Sequence
(BLAST)

001: MQPPRQNVSK GGELTNYRGV TRSMTRRHRN SLPVPDDLAM EIFSRLPSKA IAMCRCACKL WSSMLRRQDF TELFLTKSCA RPQLLFARED RSVSKYIFIT
101: SPQPENPQEN SYVVAANHLA RFPRSNGFYG CTCTSGFFCY GDDRNLKGLQ RPVHVPVISN PSTGQSLTLP RWNSKNKYGV ESYLGYDPIA KEFKVLSMNK
201: SRVSNEWISV EHQVLTLGTK KLSWRLVECC IPHRSSSQWI CISGVLYYAA RAVGSSVNSM VVSFDLRSEK FSSVKFGKAI PDSTTLVNYD GKLGLLMSGD
301: SHDASGARTS FELWVVRDAA KHEWFNHIYV LPPSWEDVVS ETMYIAGMIG TNEIVFSPSY QRVPYYVIYF NVERKTITKV GIQGLEAFHG GSFHTYLNYV
401: ENVKLL

Best Arabidopsis Sequence Match ( AT3G23960.1 )
(BLAST)

001: MRSRQLHNVS EDRETLSRRN KRSKTSLNGH IPIDLLIEIF LKLPVKSIAT CRSVSKFWTY VLGRQDFTEL FLTKSSSRPQ LLFACANDNG YFFFSSNQPQ
101: NLDENSSPIA AYPLTHVPKS RDLGPPINGL VSLRGERILK GRIRPVDVSI IYNPSTGESL TLPKTNMTRK KIYTVTSFLG YDPIEKQYKV LSMNMSYEKH
201: PKCEGYQVLT LGTGKLSWRM IKCCLNYQHP LKNSEICING VLYYLAMVNG SSWPTRAVVC FDIRSEMFNF MEVYRELSYT TTLINYNNGK LGMLMGQEAH
301: KTISGICRSF ELWVLEDTVK HEWSKHVYLL PPLWKDAVAN TRLYFAGMIG TSEIVLFRPD EPLCVFYYNI DRNTIKRVGI RGLEAFKYFR IFLNHVENVK
401: LF

Arabidopsis Description

Putative F-box protein At3g23960 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIR1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.