Factsheet for Bra021789.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
mitochondrion 3
cytosol 2
nucleus 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY19137	Canola	cytosol, mitochondrion, plastid	73.73	92.61
CDY15326	Canola	cytosol	22.16	88.28
Bra021769.1-P	Field mustard	cytosol	68.24	85.93
Bra021786.1-P	Field mustard	mitochondrion	51.37	71.0
Bra021772.1-P	Field mustard	plastid	47.84	62.56
Bra021767.1-P	Field mustard	cytosol	48.24	61.96
Bra021785.1-P	Field mustard	mitochondrion	46.27	61.78
Bra027364.1-P	Field mustard	mitochondrion	47.45	61.73
Bra023809.1-P	Field mustard	mitochondrion	38.82	60.37
Bra021783.1-P	Field mustard	mitochondrion	45.88	59.85
Bra021784.1-P	Field mustard	plastid	45.49	59.64
Bra021782.1-P	Field mustard	plastid	44.9	59.33
Bra039989.1-P	Field mustard	cytosol	46.86	59.31
Bra021780.1-P	Field mustard	mitochondrion	56.08	48.07
AT3G23960.1	Thale cress	cytosol	37.25	47.26
Bra021730.1-P	Field mustard	cytosol	34.31	43.21
Bra005628.1-P	Field mustard	cytosol	34.12	42.65
Bra021702.1-P	Field mustard	cytosol, peroxisome, plastid	32.75	41.85
Bra034016.1-P	Field mustard	cytosol	32.75	41.54
Bra022877.1-P	Field mustard	cytosol	31.57	41.07
Bra034015.1-P	Field mustard	cytosol, nucleus, peroxisome	31.96	40.95
Bra005629.1-P	Field mustard	cytosol	30.2	40.42
Bra022876.1-P	Field mustard	cytosol	12.16	40.0
Bra009129.1-P	Field mustard	cytosol	30.78	39.55
Bra036901.1-P	Field mustard	cytosol	31.57	38.33
Bra019597.1-P	Field mustard	nucleus	13.33	37.57
Bra005631.1-P	Field mustard	cytosol	10.39	37.06
Bra017982.1-P	Field mustard	cytosol	29.22	36.52
Bra036902.1-P	Field mustard	cytosol	29.02	36.19
Bra033850.1-P	Field mustard	cytosol	19.22	35.0
Bra017983.1-P	Field mustard	cytosol	27.06	34.07
Bra033908.1-P	Field mustard	cytosol	23.92	31.61
Bra000514.1-P	Field mustard	cytosol, nucleus, plasma membrane	26.86	23.7
Bra023245.1-P	Field mustard	cytosol	19.02	20.08
Bra021777.1-P	Field mustard	cytosol	34.31	19.13

Protein Annotations

Gene3D:1.20.1280.50	Gene3D:3.80.10.10	MapMan:35.1	EnsemblPlantsGene:Bra021789	EnsemblPlants:Bra021789.1	EnsemblPlants:Bra021789.1-P
InterPro:F-box-assoc_dom_typ3	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	UniProt:M4DZ42	PFAM:PF00646
PFAM:PF08268	PANTHER:PTHR31790	PANTHER:PTHR31790:SF47	SMART:SM00256	SUPFAM:SSF81383	TIGRFAMs:TIGR01640
UniParc:UPI0002544F22	:	:	:	:	:

Description

AT2G31470 (E=2e-093) | F-box family protein

Coordinates

chrA04:-:14471890..14474517

Molecular Weight (calculated)

58176.1 Da

IEP (calculated)

9.549

GRAVY (calculated)

-0.280

Length

510 amino acids

Sequence
(BLAST)

001: MKPQRQNVRE GGLTISLRVM RSMIKLHQNS LLLPDDLILE IFSRLPSKFI ARCRCLSKLW ASTLRDQDFQ NQYELSLQEI NTQRVRYELK SFQNDNELYS
101: RVSAMQPPRQ NVSKGGELTN YRGVTRSMTR RHRNSLPVPD DLAMEIFSRL PPKAVARCRC ACKLWSSILR RQDFTALFLT KSCARPQLLF AREDRSVSKY
201: IFISSPQPGN PQENAYVVAA NHLARFPRSN GFYGCTCTSG FFCYGDDRNL KGLQRPVHVP VICNPSTGQS LTMPRLISKK RYGVQSYLGY EPIEKELKLL
301: SMNNSLVSDE WISVEHQVLT LGTKKLSWRL VECCIPHRSS SKWICISGVL YYAATAAGSS ENSMVVCFDL RSEKFSSVKF GKAMPDSTTL VNYDGKLGLL
401: MSGDSHDVSG ARTSFELWVV RDAAKHEWFN HIYVLPPSWE DVVSETMYIA GMIGTNEIVF SPSYQRVPYY VIYFNVERKT ITKVGIQGLE AFHGGSFHTY
501: LNYVQNVKLL

Best Arabidopsis Sequence Match ( AT3G23960.1 )
(BLAST)

001: MRSRQLHNVS EDRETLSRRN KRSKTSLNGH IPIDLLIEIF LKLPVKSIAT CRSVSKFWTY VLGRQDFTEL FLTKSSSRPQ LLFACANDNG YFFFSSNQPQ
101: NLDENSSPIA AYPLTHVPKS RDLGPPINGL VSLRGERILK GRIRPVDVSI IYNPSTGESL TLPKTNMTRK KIYTVTSFLG YDPIEKQYKV LSMNMSYEKH
201: PKCEGYQVLT LGTGKLSWRM IKCCLNYQHP LKNSEICING VLYYLAMVNG SSWPTRAVVC FDIRSEMFNF MEVYRELSYT TTLINYNNGK LGMLMGQEAH
301: KTISGICRSF ELWVLEDTVK HEWSKHVYLL PPLWKDAVAN TRLYFAGMIG TSEIVLFRPD EPLCVFYYNI DRNTIKRVGI RGLEAFKYFR IFLNHVENVK
401: LF

Arabidopsis Description

Putative F-box protein At3g23960 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIR1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.