Factsheet for Bra005628.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
plasma membrane 1
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY42089	Canola	cytosol	98.77	98.77
Bra021767.1-P	Field mustard	cytosol	45.1	46.35
Bra021782.1-P	Field mustard	plastid	41.67	44.04
Bra021785.1-P	Field mustard	mitochondrion	41.18	43.98
Bra021702.1-P	Field mustard	cytosol, peroxisome, plastid	42.65	43.61
Bra034016.1-P	Field mustard	cytosol	42.89	43.53
Bra021769.1-P	Field mustard	cytosol	43.14	43.46
Bra021784.1-P	Field mustard	plastid	41.42	43.44
Bra021772.1-P	Field mustard	plastid	41.42	43.33
Bra021730.1-P	Field mustard	cytosol	42.89	43.21
Bra022876.1-P	Field mustard	cytosol	16.18	42.58
Bra021783.1-P	Field mustard	mitochondrion	40.69	42.46
Bra034015.1-P	Field mustard	cytosol, nucleus, peroxisome	40.93	41.96
Bra009129.1-P	Field mustard	cytosol	40.69	41.81
Bra027364.1-P	Field mustard	mitochondrion	39.71	41.33
Bra039989.1-P	Field mustard	cytosol	40.69	41.19
Bra036901.1-P	Field mustard	cytosol	42.4	41.19
Bra005629.1-P	Field mustard	cytosol	38.24	40.94
Bra036902.1-P	Field mustard	cytosol	40.93	40.83
Bra022877.1-P	Field mustard	cytosol	39.22	40.82
Bra023809.1-P	Field mustard	mitochondrion	32.6	40.55
Bra021786.1-P	Field mustard	mitochondrion	36.03	39.84
Bra017982.1-P	Field mustard	cytosol	38.48	38.48
Bra005631.1-P	Field mustard	cytosol	13.48	38.46
Bra017983.1-P	Field mustard	cytosol	37.01	37.28
Bra033850.1-P	Field mustard	cytosol	25.49	37.14
Bra033908.1-P	Field mustard	cytosol	34.56	36.53
Bra019597.1-P	Field mustard	nucleus	15.69	35.36
Bra021789.1-P	Field mustard	cytosol	42.65	34.12
Bra021780.1-P	Field mustard	mitochondrion	40.93	28.07
Bra000514.1-P	Field mustard	cytosol, nucleus, plasma membrane	36.03	25.43
Bra023245.1-P	Field mustard	cytosol	22.79	19.25
Bra021777.1-P	Field mustard	cytosol	40.2	17.92

Protein Annotations

EnsemblPlants:Bra005628.1	EnsemblPlants:Bra005628.1-P	EnsemblPlantsGene:Bra005628	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-assoc_dom_typ3	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810
InterPro:IPR032675	InterPro:LRR_dom_sf	PANTHER:PTHR31790	PANTHER:PTHR31790:SF47	PFAM:PF00646	PFAM:PF08268
SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI00025477E0	UniProt:M4CN40	MapMan:35.1	:

Description

AT2G31470 (E=1e-093) | F-box family protein

Coordinates

chrA05:+:6620887..6622113

Molecular Weight (calculated)

46849.9 Da

IEP (calculated)

9.598

GRAVY (calculated)

-0.226

Length

408 amino acids

Sequence
(BLAST)

001: MKSQRQNDTE VCLTITRLTK LSKNSTNVRE DLLPTDLLIE IFSRFPTKHI AKYIATCRCV SKLWSSIFYR PEFTDVLFLT KSSASPQLLF ACQTQSELLF
101: LSSPQPQDPV ENPSLVTASC LTKVPFNFSN ESFSTINGFL CLRYDIVKER KSSKMQFICN PSTGQRLPLP KMKTVGQKSY FGYDPIGKQY KLFSMTSSND
201: KYKGNWKEYR ILTLGTQKLS WRRKECCVPH CPVHNEICIN GLLYYRANGD GFTKATMIVC FDFRSEKFSF MKVTENFSRA VDHKATLINY NGKLGSLRWE
301: EPYSLSRGTG SFVLWVLQDA EKHKWSKHVY VLPPLGIELA GMAELYFVGV IGTDEIVLSM DIPTKPFYLF YYNIKRNSIV RVEIQGIQAL KGRSVRTLLN
401: HVENVNLM

Best Arabidopsis Sequence Match ( AT2G31470.1 )
(BLAST)

001: MKSRRQNVSV ARQTILGRDE NFEPIPIDLV IEIFSRSPVK SIARCRCVSK LWASILRLPY FTELYLTKSC ARPRLLFACQ KHRELFFFST PQPHNPNESS
101: SPLAASFHMK IPFDGRFNII SPIGGLVFVR YEQILKGRKT PEFVSAICNP STGQSLTLPK PKTRKRIWGT SHFGYDPIEK QFKVLSMNIG DGVYKEHYVL
201: TLGTENLSWR RIECSIPHVH GSKGICINGV LYYRAKADMF SGTLMIVCFD VRFEKFSYIK ILKPTTTLIS YNGKLASLVW EGPSYICGKR FEMWVLGDPE
301: KHEWLKHTYE LRPRWQNVLG EDLLIFAGMT GTNEIVLSPK YPSHPFYVFY YNLERNTIRR VEIQGMGAFK VNEDYIFLDH VEDVKLI

Arabidopsis Description

DORF-box protein DOR [Source:UniProtKB/Swiss-Prot;Acc:Q5BPS3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.