Factsheet for Bra005629.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY42091	Canola	mitochondrion	54.86	67.64
Bra005631.1-P	Field mustard	cytosol	19.16	51.05
Bra022877.1-P	Field mustard	cytosol	46.72	45.41
Bra021772.1-P	Field mustard	plastid	42.26	41.28
Bra021767.1-P	Field mustard	cytosol	40.94	39.29
Bra021785.1-P	Field mustard	mitochondrion	38.85	38.74
Bra027364.1-P	Field mustard	mitochondrion	39.63	38.52
Bra021769.1-P	Field mustard	cytosol	40.68	38.27
Bra005628.1-P	Field mustard	cytosol	40.94	38.24
Bra021783.1-P	Field mustard	mitochondrion	39.11	38.11
Bra009129.1-P	Field mustard	cytosol	39.63	38.04
Bra021782.1-P	Field mustard	plastid	38.32	37.82
Bra021784.1-P	Field mustard	plastid	38.58	37.79
Bra021702.1-P	Field mustard	cytosol, peroxisome, plastid	39.37	37.59
Bra034016.1-P	Field mustard	cytosol	39.37	37.31
Bra021730.1-P	Field mustard	cytosol	39.37	37.04
Bra039989.1-P	Field mustard	cytosol	38.32	36.23
Bra036901.1-P	Field mustard	cytosol	39.9	36.19
Bra034015.1-P	Field mustard	cytosol, nucleus, peroxisome	37.8	36.18
Bra022876.1-P	Field mustard	cytosol	14.7	36.13
Bra023809.1-P	Field mustard	mitochondrion	30.97	35.98
Bra036902.1-P	Field mustard	cytosol	38.58	35.94
Bra033850.1-P	Field mustard	cytosol	26.25	35.71
Bra017982.1-P	Field mustard	cytosol	38.06	35.54
Bra017983.1-P	Field mustard	cytosol	37.27	35.06
Bra019597.1-P	Field mustard	nucleus	16.27	34.25
Bra021786.1-P	Field mustard	mitochondrion	32.55	33.6
Bra021789.1-P	Field mustard	cytosol	40.42	30.2
Bra033908.1-P	Field mustard	cytosol	29.92	29.53
Bra021780.1-P	Field mustard	mitochondrion	39.9	25.55
Bra000514.1-P	Field mustard	cytosol, nucleus, plasma membrane	33.86	22.32
Bra023245.1-P	Field mustard	cytosol	21.0	16.56
Bra021777.1-P	Field mustard	cytosol	39.37	16.39

Protein Annotations

EnsemblPlants:Bra005629.1	EnsemblPlants:Bra005629.1-P	EnsemblPlantsGene:Bra005629	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-assoc_dom_typ3	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810
PANTHER:PTHR31790	PANTHER:PTHR31790:SF47	PFAM:PF00646	PFAM:PF08268	PFscan:PS50181	SMART:SM00256
SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI00025477E1	UniProt:M4CN41	MapMan:35.1	:

Description

AT5G65850 (E=2e-079) | F-box family protein

Coordinates

chrA05:+:6623976..6625121

Molecular Weight (calculated)

43049.8 Da

IEP (calculated)

10.332

GRAVY (calculated)

-0.038

Length

381 amino acids

Sequence
(BLAST)

001: MEEKTIPTDL IIDILSKLPM KSLARCRCVS KLWASIVDLP CTTELFTTRA SAHPQLLFVY RQKYKLVFLS LPQPQNLDKN SPPQNLDKNS PPVAVKHLSC
101: IPFRGSSCYV SGHVQGLVSL RVIHKRMSLQ IICNPSTGQA LTLPKIKSSS FIFRVRSILG YDPIDNQFKV LSLSGYSKIT PLDQQHQVLT LGTQELKWRT
201: IKCSTPQHSF KHGICINGVL YCPVRAPGRN HMIGCFHVRS EKFTFIKVKT TFIKAVFHGT LINYNGKLGS LVSGGSRFAD GASRSFQLLV IGDFEKQEWS
301: THNYVLPRLW KNLVGRAVLR LVGFVGTNEI VFSHPSQVIY YNIEKRTILK VAIQGAEAPQ YNFVITFLNH MEDLKFTHAF K

Best Arabidopsis Sequence Match ( AT1G33020.1 )
(BLAST)

001: MNRAENLDSI PTDLILEIFS RMSTKSIGRC RCVSKLWKSM LGHPYFTELF LTRSSDHPRL LFGVKRERQW LFFSSPQPQD LYEKSSLVDF HMNFSDFHMN
101: FSGDIRRNEC TYVSGFIYFP RKRIKNYLCD FRVICNPITG QYAILQLITF HEKRSFLGFD PIDKQFKVLR MKYNDRGIVV HHILTLEPGK MRWRKIRCPL
201: AHEPFWEEIC ANGVLYYLAE PTDGGSYVIC CFDVRSEKFK FIDAKCFGDF SIQLINYKGK LGGISWKYDT VDGKRTVELY MWVLEDVEKQ KWSKYVYPLP
301: GNSYHYSVAG VTAKGDIVFV KTYTSKPFYV FYVNPEKKTF QRVEIHGNHE VFDTNNLVYA FVDHVEDLQF DVMKKTYAAK PISPPKQKPK PPSTETSSRE
401: DHQGWISISS RKYHQVRTIA HRQQGRRKFE SINKFNALYL DDGDEDTVAH QQRDHHTFKS ISKFKAQRLL DDDEFTGVKT SKCDTSHLQN RVTAVHELHI
501: WSITVGKVSL ASQVSIKPEA DTDAILDKVI EYIKRHHVTI QVEKEQNP

Arabidopsis Description

Putative F-box protein At1g33020 [Source:UniProtKB/Swiss-Prot;Acc:Q9MAP1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.