CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX79453	Canola	plastid	48.17	51.84
CDY65287	Canola	cytosol	11.74	49.48
CDY46037	Canola	extracellular	16.38	49.26
CDY70182	Canola	extracellular	16.38	49.26
CDY66546	Canola	cytosol	29.34	48.0
CDY15344	Canola	mitochondrion	39.36	46.53
CDY12626	Canola	cytosol	41.81	45.72
CDY67066	Canola	cytosol, mitochondrion, nucleus, peroxisome	44.99	45.43
CDX70134	Canola	cytosol	43.28	44.92
CDY67859	Canola	cytosol, mitochondrion	41.32	44.71
CDY12627	Canola	cytosol	43.28	44.47
CDY19088	Canola	cytosol	44.01	44.44
CDY65288	Canola	mitochondrion	29.83	44.2
CDX98860	Canola	cytosol	43.28	43.81
CDY66545	Canola	cytosol, peroxisome, plastid	37.65	41.96
CDY60955	Canola	cytosol, extracellular, plastid, vacuole	30.81	41.04
CDY15332	Canola	cytosol	39.12	41.03
CDY70684	Canola	cytosol	20.54	40.98
CDY60961	Canola	cytosol	39.61	40.81
CDY15324	Canola	cytosol	38.14	40.73
CDY15326	Canola	cytosol	12.71	40.62
CDY29772	Canola	cytosol	40.34	40.44
CDY15359	Canola	cytosol, plastid	39.12	40.2
CDX79454	Canola	cytosol	29.58	40.2
CDY42089	Canola	cytosol	40.1	40.2
CDY67625	Canola	mitochondrion	25.18	40.08
CDY15357	Canola	cytosol, nucleus, plastid	5.38	40.0
CDY19134	Canola	mitochondrion	37.16	39.79
CDY19137	Canola	cytosol, mitochondrion, plastid	39.36	39.66
CDY15327	Canola	cytosol	37.16	39.48
CDY12239	Canola	mitochondrion	26.89	39.43
CDY00206	Canola	nucleus	17.36	39.23
CDY15352	Canola	mitochondrion	38.63	39.11
CDY72470	Canola	golgi, nucleus, plasma membrane	37.16	39.07
CDY15336	Canola	plastid	37.41	39.03
CDY15333	Canola	mitochondrion	36.43	38.8
CDX83262	Canola	cytosol, mitochondrion	37.65	38.69
CDY31173	Canola	cytosol, mitochondrion	37.65	38.69
CDY60959	Canola	cytosol, mitochondrion, plastid	26.16	38.63
CDY29771	Canola	cytosol, plastid	31.3	38.44
CDY52273	Canola	cytosol, plastid	27.87	38.26
CDY18160	Canola	cytosol	16.63	38.2
CDY19132	Canola	mitochondrion	36.43	37.91
CDY05937	Canola	cytosol	31.05	37.57
CDX97551	Canola	mitochondrion	35.7	37.24
CDY72410	Canola	cytosol	33.74	37.2
CDY15358	Canola	cytosol, extracellular, plastid	12.71	37.14
CDY51358	Canola	cytosol	34.23	37.04
CDY10678	Canola	cytosol	34.72	36.79
CDY08137	Canola	cytosol	36.67	36.76
CDY08136	Canola	cytosol	36.19	36.54
CDY52272	Canola	cytosol	1.96	36.36
CDY42092	Canola	cytosol	12.47	36.17
CDY71858	Canola	cytosol, mitochondrion, nucleus, plastid	11.0	35.71
CDY42091	Canola	mitochondrion	26.65	35.28
CDY30661	Canola	cytosol	19.8	34.91
CDY29942	Canola	cytosol	24.45	33.67
CDX97874	Canola	extracellular	21.52	32.84
CDY12259	Canola	cytosol	24.94	31.48
CDY08200	Canola	cytosol, golgi, mitochondrion, plasma membrane	33.25	30.77
CDY12260	Canola	cytosol	23.72	30.41
CDY30662	Canola	extracellular, mitochondrion	9.78	28.99
CDY19127	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	40.1	28.52
CDY19131	Canola	mitochondrion	37.41	25.71
CDY15353	Canola	cytosol	28.85	22.91
CDY26564	Canola	mitochondrion	21.03	18.78
CDY15999	Canola	cytosol, mitochondrion	25.43	16.15
CDY15342	Canola	cytosol	5.13	9.21

Protein Annotations

MapMan:35.1	UniProt:A0A078HZD6	EnsemblPlants:CDY42088	ProteinID:CDY42088	ProteinID:CDY42088.1	InterPro:F-box-assoc_dom_typ3
InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSBRNA2T00074129001	InterPro:IPR001810	PFAM:PF08268	PANTHER:PTHR31790	PANTHER:PTHR31790:SF47	SMART:SM00256
SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI0004EF4CA4	SEG:seg	:	:

Description

BnaA05g10980DBnaA05g10980D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HZD6]

Coordinates

chrLK032514:+:148524..150646

Molecular Weight (calculated)

47089.3 Da

IEP (calculated)

9.286

GRAVY (calculated)

-0.131

Length

409 amino acids

Sequence
(BLAST)

001: MKLRRLNLSN DVPTSFSCIS RSSTAFNERE NSEPIPHDLI YELLLRLPAK SIARSRCLSK LWASILRSHD FTELFLTRSS TRQKLLFFCL KDHDFFFFTA
101: PKNPDNNSSL VVPDYHMKFP FVGIGFQICG HVRGLVCLTH LRTVKGGKHT VPEICNPSTG QSLPLPKVKT RRRVNVRRFF AYDPIGKQFK VLSMTWPCYR
201: SYLLCQEYKV LTIGTGKLSW RMVECSVPHQ PISGEICING CLYYYSMVDS VEHRYVIVCF DVTSEKLTSI RKPMEDVKCI VSNLVNYNGN LATLTSDGDS
301: QVIGQNLRTA LIELWVLADA EKHEWSKHIY ELPSLLPPNF LPKKTYYFIG ISGGNEIVMS PRHSSSLFYV FYYNFERGII RKVEILGTDA FKHRTINTFL
401: HHVEDVKLM

Best Arabidopsis Sequence Match ( AT3G61340.2 )
(BLAST)

001: MIIIRFNQTE GRKKVIRVLR EAASTMMTRR KKRSCSNQKK EEEKSERIPF DLVIEILLRL PVKSIARFRY VSKLWQSTLR GQHFTESYLT ISSSRPKILF
101: TCLKDCETFF FSSPHPQDLS PIAANLHMSF PISCPSNICR PVRGWLCGLH QRTTKGTTVT EPLICNPSTG ESVVLRKVKT RRKGVISFLG FDPIDKNFKV
201: LCMTRSCIGR ADSEEHQVHT LETGKKPSRK MIECDILHYP VPVEHTNGFS QYDGVCINGV LYYLAIVHGV SDDRYPDVVC FEFGSDKFKY IKKVAGHDME
301: ILYLGRRLNS ILVNYKGKLA KLQPNMPNNV CTGIQLWVLE DAEKHEWSSH IYVLPPPWRN VYEETKLCFV GTTRKGEIVL SPNTISDFFY LLYYNPDRNT
401: ITIVKIKGME TFQSHKAYTF LDHLEDVNLV PIWRM

Arabidopsis Description

F-box and associated interaction domains-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LRT9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.