CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 3
mitochondrion 2
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY60961	Canola	cytosol	95.23	95.47
CDY52272	Canola	cytosol	4.02	72.73
CDY19134	Canola	mitochondrion	65.58	68.32
CDY15332	Canola	cytosol	66.83	68.21
CDY15333	Canola	mitochondrion	65.08	67.45
CDY15336	Canola	plastid	66.33	67.35
CDY15324	Canola	cytosol	62.81	65.27
CDY15352	Canola	mitochondrion	64.32	63.37
CDY15326	Canola	cytosol	20.35	63.28
CDY19132	Canola	mitochondrion	62.31	63.1
CDY60959	Canola	cytosol, mitochondrion, plastid	43.72	62.82
CDY19137	Canola	cytosol, mitochondrion, plastid	63.82	62.56
CDY60955	Canola	cytosol, extracellular, plastid, vacuole	47.24	61.24
CDY15327	Canola	cytosol	59.05	61.04
CDX97551	Canola	mitochondrion	58.79	59.69
CDY15357	Canola	cytosol, nucleus, plastid	8.04	58.18
CDY18160	Canola	cytosol	25.38	56.74
CDY51358	Canola	cytosol	53.77	56.61
CDY52273	Canola	cytosol, plastid	41.71	55.7
CDY15358	Canola	cytosol, extracellular, plastid	19.1	54.29
CDY71858	Canola	cytosol, mitochondrion, nucleus, plastid	16.08	50.79
CDX97874	Canola	extracellular	32.41	48.13
CDY46037	Canola	extracellular	15.83	46.32
CDY70182	Canola	extracellular	15.83	46.32
CDX79454	Canola	cytosol	34.42	45.51
CDY65287	Canola	cytosol	11.06	45.36
CDY66546	Canola	cytosol	28.14	44.8
AT3G23960.1	Thale cress	cytosol	45.23	44.78
CDY42089	Canola	cytosol	45.73	44.61
CDY12239	Canola	mitochondrion	30.65	43.73
CDY19131	Canola	mitochondrion	65.33	43.7
CDX98860	Canola	cytosol	42.46	41.83
CDY15344	Canola	mitochondrion	35.93	41.33
CDY12627	Canola	cytosol	40.95	40.95
CDY65288	Canola	mitochondrion	28.39	40.94
CDX70134	Canola	cytosol	39.95	40.36
CDY29771	Canola	cytosol, plastid	33.67	40.24
CDY12626	Canola	cytosol	37.69	40.11
CDY72470	Canola	golgi, nucleus, plasma membrane	38.94	39.85
CDY42092	Canola	cytosol	14.07	39.72
CDY67066	Canola	cytosol, mitochondrion, nucleus, peroxisome	39.95	39.26
CDY66545	Canola	cytosol, peroxisome, plastid	36.18	39.24
CDY42088	Canola	cytosol	40.2	39.12
CDY19088	Canola	cytosol	39.7	39.01
CDY42091	Canola	mitochondrion	30.15	38.84
CDY67625	Canola	mitochondrion	24.87	38.52
CDY67859	Canola	cytosol, mitochondrion	36.43	38.36
CDY31173	Canola	cytosol, mitochondrion	37.44	37.44
CDX79453	Canola	plastid	35.43	37.11
CDY08137	Canola	cytosol	37.94	37.01
CDY29772	Canola	cytosol	37.94	37.01
CDX83262	Canola	cytosol, mitochondrion	36.68	36.68
CDY15353	Canola	cytosol	47.24	36.5
CDY30661	Canola	cytosol	20.85	35.78
CDY72410	Canola	cytosol	32.91	35.31
CDY05937	Canola	cytosol	29.4	34.62
CDY08136	Canola	cytosol	34.92	34.32
CDY70684	Canola	cytosol	17.59	34.15
CDY30662	Canola	extracellular, mitochondrion	11.56	33.33
CDY10678	Canola	cytosol	31.91	32.9
CDY00206	Canola	nucleus	14.82	32.6
CDY08200	Canola	cytosol, golgi, mitochondrion, plasma membrane	35.18	31.67
CDY29942	Canola	cytosol	22.61	30.3
CDY19127	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	43.47	30.09
CDY12260	Canola	cytosol	22.86	28.53
CDY12259	Canola	cytosol	23.12	28.4
CDY26564	Canola	mitochondrion	22.86	19.87
CDY15999	Canola	cytosol, mitochondrion	25.63	15.84
CDY15342	Canola	cytosol	6.53	11.4

Protein Annotations

Gene3D:1.20.1280.50	MapMan:35.1	UniProt:A0A078FR48	EnsemblPlants:CDY15359	ProteinID:CDY15359	ProteinID:CDY15359.1
InterPro:F-box-assoc_dom_typ3	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00085649001	InterPro:IPR001810	PFAM:PF00646	PFAM:PF08268	PFscan:PS50181
PANTHER:PTHR31790	PANTHER:PTHR31790:SF47	SMART:SM00256	SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI0004EEEF28

Description

BnaC04g42640DBnaC04g42640D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FR48]

Coordinates

chrLK032054:-:253576..254799

Molecular Weight (calculated)

45298.8 Da

IEP (calculated)

8.913

GRAVY (calculated)

-0.105

Length

398 amino acids

Sequence
(BLAST)

001: MKQRKQNDSE NGVNITRGIT RSMTTRHRNS LTLPVEVVTE IFSRLPSKSI ARCRCVCKLW SSMLRRQDFT ELFLTKSCAH PRLLFACEDG NEHEFLFFSS
101: PQPHNPEENS YVVAVNNLAR FPSSYQLFGC TSGFLCYGAN LILKATKKRA YVTVICNPST GQSLILPTLK SSKTSGIESY LGYDPVSKEF KVLSVRYDGW
201: ISKELHVLTL GTKKLSWRLV ECCVPHSTSR KWICISGVLY YIARTSEGYY MVVCFDLRTE KFSFVKFSRA LPGSATLINY NGRLGLLMSL EDFGNVSRSS
301: KSIELWVLGD AAKNEWSEHV YMLPDFWKDV VAESMCIAGM VGTHEIILSP CYQYVPSYVI YFNVESKTIR KVGIQGMEAF QGNRCYTYLN YVENVKLL

Best Arabidopsis Sequence Match ( AT2G31470.1 )
(BLAST)

001: MKSRRQNVSV ARQTILGRDE NFEPIPIDLV IEIFSRSPVK SIARCRCVSK LWASILRLPY FTELYLTKSC ARPRLLFACQ KHRELFFFST PQPHNPNESS
101: SPLAASFHMK IPFDGRFNII SPIGGLVFVR YEQILKGRKT PEFVSAICNP STGQSLTLPK PKTRKRIWGT SHFGYDPIEK QFKVLSMNIG DGVYKEHYVL
201: TLGTENLSWR RIECSIPHVH GSKGICINGV LYYRAKADMF SGTLMIVCFD VRFEKFSYIK ILKPTTTLIS YNGKLASLVW EGPSYICGKR FEMWVLGDPE
301: KHEWLKHTYE LRPRWQNVLG EDLLIFAGMT GTNEIVLSPK YPSHPFYVFY YNLERNTIRR VEIQGMGAFK VNEDYIFLDH VEDVKLI

Arabidopsis Description

DORF-box protein DOR [Source:UniProtKB/Swiss-Prot;Acc:Q5BPS3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.