CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plastid

Predictor Summary:

plastid 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX97551	Canola	mitochondrion	88.25	67.09
CDY71858	Canola	cytosol, mitochondrion, nucleus, plastid	28.19	66.67
CDY15357	Canola	cytosol, nucleus, plastid	10.74	58.18
CDY15332	Canola	cytosol	60.74	46.41
CDY15336	Canola	plastid	59.73	45.41
CDY60955	Canola	cytosol, extracellular, plastid, vacuole	46.64	45.28
CDY15352	Canola	mitochondrion	60.4	44.55
CDY15324	Canola	cytosol	57.05	44.39
CDY19137	Canola	cytosol, mitochondrion, plastid	60.4	44.34
CDY19134	Canola	mitochondrion	55.37	43.19
CDY15327	Canola	cytosol	54.7	42.34
CDY60961	Canola	cytosol	55.7	41.81
CDY15359	Canola	cytosol, plastid	55.7	41.71
CDY15333	Canola	mitochondrion	53.69	41.67
CDY65287	Canola	cytosol	13.09	40.21
CDY18160	Canola	cytosol	23.49	39.33
CDY19132	Canola	mitochondrion	50.34	38.17
CDY51358	Canola	cytosol	48.32	38.1
CDY15358	Canola	cytosol, extracellular, plastid	17.11	36.43
CDY15326	Canola	cytosol	15.44	35.94
AT3G23960.1	Thale cress	cytosol	46.64	34.58
CDY60959	Canola	cytosol, mitochondrion, plastid	31.21	33.57
CDX79454	Canola	cytosol	33.56	33.22
CDY29771	Canola	cytosol, plastid	36.58	32.73
CDY66545	Canola	cytosol, peroxisome, plastid	40.27	32.7
CDY67066	Canola	cytosol, mitochondrion, nucleus, peroxisome	43.62	32.1
CDX98860	Canola	cytosol	43.29	31.93
CDY12239	Canola	mitochondrion	29.87	31.9
CDY15344	Canola	mitochondrion	36.91	31.79
CDY19088	Canola	cytosol	42.62	31.36
CDY19131	Canola	mitochondrion	62.42	31.26
CDY42089	Canola	cytosol	42.28	30.88
CDX70134	Canola	cytosol	40.6	30.71
CDX97874	Canola	extracellular	27.52	30.6
CDY42091	Canola	mitochondrion	31.54	30.42
CDY12627	Canola	cytosol	40.27	30.15
CDY12626	Canola	cytosol	37.58	29.95
CDY67859	Canola	cytosol, mitochondrion	37.92	29.89
CDY72470	Canola	golgi, nucleus, plasma membrane	38.93	29.82
CDY46037	Canola	extracellular	13.42	29.41
CDY70182	Canola	extracellular	13.42	29.41
CDY66546	Canola	cytosol	23.49	28.0
CDY42088	Canola	cytosol	38.26	27.87
CDY08137	Canola	cytosol	37.92	27.7
CDY67625	Canola	mitochondrion	23.83	27.63
CDY00206	Canola	nucleus	16.78	27.62
CDY05937	Canola	cytosol	30.87	27.22
CDY30661	Canola	cytosol	21.14	27.16
CDY29772	Canola	cytosol	36.91	26.96
CDY08136	Canola	cytosol	36.58	26.91
CDY70684	Canola	cytosol	18.46	26.83
CDY72410	Canola	cytosol	33.22	26.68
CDY65288	Canola	mitochondrion	24.5	26.45
CDY31173	Canola	cytosol, mitochondrion	35.23	26.38
CDX83262	Canola	cytosol, mitochondrion	34.23	25.63
CDX79453	Canola	plastid	32.21	25.26
CDY15353	Canola	cytosol	43.29	25.05
CDY10678	Canola	cytosol	31.21	24.09
CDY08200	Canola	cytosol, golgi, mitochondrion, plasma membrane	35.23	23.76
CDY29942	Canola	cytosol	22.82	22.9
CDY42092	Canola	cytosol	10.4	21.99
CDY19127	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	41.28	21.39
CDY30662	Canola	extracellular, mitochondrion	9.4	20.29
CDY26564	Canola	mitochondrion	25.17	16.38
CDY12259	Canola	cytosol	17.79	16.36
CDY12260	Canola	cytosol	17.11	15.99
CDY15999	Canola	cytosol, mitochondrion	29.19	13.51
CDY15342	Canola	cytosol	7.72	10.09
CDY52272	Canola	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.20.1280.50	MapMan:35.1	UniProt:A0A078IT92	EnsemblPlants:CDY52273	ProteinID:CDY52273	ProteinID:CDY52273.1
InterPro:F-box-assoc_dom_typ3	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00005260001	InterPro:IPR001810	PFAM:PF00646	PFAM:PF08268	PANTHER:PTHR31790
PANTHER:PTHR31790:SF47	SMART:SM00256	SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI0004EEFBB1	SEG:seg

Description

BnaC05g52170DBnaC05g52170D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IT92]

Coordinates

chrLK033072:-:59862..61024

Molecular Weight (calculated)

33472.4 Da

IEP (calculated)

9.389

GRAVY (calculated)

-0.082

Length

298 amino acids

Sequence
(BLAST)

001: MTSQRAATRS MTSLHRNSLP IPDDLAVEIF SRLPSKAIAR CRCACKLWSS MLLREDFTDL FLTKSSARPQ LLFACQDHIR NYIFFSSSPH PEEEENSSSP
101: IILHVSLVRP TIVERRGQDL PLVDNYLGYD PVSKKFKVLS MERSKISAKH QVLTLGTKKL SWRLVQCTTA HYSSNKWISI SGVIYYAASA NRSSANSMVA
201: CFDLRVEKFS FVNFGRAMHD STTLVNYNGK LGLLMSGDAP GENISTTSKS FQLWVLQDAE WPKHVYILPP SWKDVVTKTM CFAGIIVGTN EIVLAPLL

Best Arabidopsis Sequence Match ( AT1G53790.1 )
(BLAST)

001: MVRDIVDDPL DEDDIALVKT YGLVPYSAPI KKVEKEIKEL TEKINDLCGI KESDTGLAPL SKQMMQEGQP LQVGYVSCFR YIPIDLLMDI FSRVPAKSIA
101: RFRCVSKLWE SILCRPDFKE LFMTMSSIRP PLLLFTFQDD DGNLFFFSSP HPQIPCNENT SLVPTRYHVQ HTTDSFSEIG SPLCGFICRR GKRNLDTMVI
201: CNPVTGESVS LPKVELKSIN TETRPYLGYD PVRKQLKVLC IKSDDIPNTC DEHQVLTLEN GNHLWRTIQC KPHYPKSDGI CIDGILYYTA GFDMRARVSM
301: VVCFDVRSEK FSFINIHVFM LMNDSCTLIN YKGKLGALQF TCLSPKRLRF WVLVNAEKNI WTKCIYALPP LWNNLVQHTE LAIVGMTDGG EVVLSQYCLI
401: YAFYIYYFNL ESKSLTRVQI QDVEMFKRTR VYTSLGYVEN FKLM

Arabidopsis Description

F-box and associated interaction domains-containing protein [Source:UniProtKB/TrEMBL;Acc:B3H7F2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.