CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
plasma membrane 1
mitochondrion 4
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra021785.1-P	Field mustard	mitochondrion	96.86	96.86
Bra021783.1-P	Field mustard	mitochondrion	96.6	94.37
CDY15333	Canola	mitochondrion	90.58	90.1
CDY19132	Canola	mitochondrion	76.7	74.55
CDY52272	Canola	cytosol	4.19	72.73
CDY15359	Canola	cytosol, plastid	68.32	65.58
CDY60961	Canola	cytosol	67.02	64.48
CDY15326	Canola	cytosol	21.47	64.06
CDY15336	Canola	plastid	65.18	63.52
CDY15332	Canola	cytosol	64.66	63.33
CDY15352	Canola	mitochondrion	65.44	61.88
CDY15324	Canola	cytosol	61.52	61.36
CDX97551	Canola	mitochondrion	60.73	59.18
CDY60955	Canola	cytosol, extracellular, plastid, vacuole	47.38	58.96
CDY60959	Canola	cytosol, mitochondrion, plastid	42.67	58.84
CDY19137	Canola	cytosol, mitochondrion, plastid	62.3	58.62
CDY18160	Canola	cytosol	27.23	58.43
CDY15327	Canola	cytosol	58.64	58.18
CDY51358	Canola	cytosol	55.5	56.08
CDY52273	Canola	cytosol, plastid	43.19	55.37
CDY15358	Canola	cytosol, extracellular, plastid	19.37	52.86
CDY71858	Canola	cytosol, mitochondrion, nucleus, plastid	16.23	49.21
CDY15357	Canola	cytosol, nucleus, plastid	7.07	49.09
CDX97874	Canola	extracellular	33.77	48.13
CDY46037	Canola	extracellular	16.75	47.06
CDY70182	Canola	extracellular	16.75	47.06
CDY12239	Canola	mitochondrion	32.98	45.16
AT3G23960.1	Thale cress	cytosol	46.86	44.53
CDX79454	Canola	cytosol	34.03	43.19
CDY67066	Canola	cytosol, mitochondrion, nucleus, peroxisome	44.24	41.73
CDY42089	Canola	cytosol	43.98	41.18
CDY19131	Canola	mitochondrion	63.87	41.01
CDY12626	Canola	cytosol	39.79	40.64
CDY19088	Canola	cytosol	42.93	40.49
CDY42092	Canola	cytosol	14.92	40.43
CDX98860	Canola	cytosol	42.67	40.35
CDX70134	Canola	cytosol	41.36	40.1
CDY67625	Canola	mitochondrion	26.44	39.3
CDY12627	Canola	cytosol	40.84	39.2
CDY67859	Canola	cytosol, mitochondrion	38.74	39.15
CDY65288	Canola	mitochondrion	28.01	38.77
CDY29771	Canola	cytosol, plastid	33.77	38.74
CDY66546	Canola	cytosol	25.13	38.4
CDY15344	Canola	mitochondrion	34.29	37.86
CDY72470	Canola	golgi, nucleus, plasma membrane	38.48	37.79
CDY42091	Canola	mitochondrion	30.37	37.54
CDY42088	Canola	cytosol	39.79	37.16
CDY65287	Canola	cytosol	9.42	37.11
CDY29772	Canola	cytosol	38.74	36.27
CDY66545	Canola	cytosol, peroxisome, plastid	34.82	36.24
CDY31173	Canola	cytosol, mitochondrion	37.43	35.93
CDY15353	Canola	cytosol	48.43	35.92
CDY70684	Canola	cytosol	18.85	35.12
CDX83262	Canola	cytosol, mitochondrion	36.39	34.92
CDY30662	Canola	extracellular, mitochondrion	12.57	34.78
CDX79453	Canola	plastid	34.55	34.74
CDY30661	Canola	cytosol	20.94	34.48
CDY00206	Canola	nucleus	16.23	34.25
CDY72410	Canola	cytosol	33.25	34.23
CDY08137	Canola	cytosol	36.39	34.07
CDY05937	Canola	cytosol	30.1	34.02
CDY10678	Canola	cytosol	34.29	33.94
CDY08136	Canola	cytosol	35.34	33.33
CDY08200	Canola	cytosol, golgi, mitochondrion, plasma membrane	36.65	31.67
CDY29942	Canola	cytosol	23.82	30.64
CDY19127	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	41.62	27.65
CDY12260	Canola	cytosol	22.77	27.27
CDY12259	Canola	cytosol	23.04	27.16
CDY26564	Canola	mitochondrion	23.04	19.21
CDY15999	Canola	cytosol, mitochondrion	26.44	15.68
CDY15342	Canola	cytosol	7.33	12.28

Protein Annotations

Gene3D:1.20.1280.50	MapMan:35.1	UniProt:A0A078G0Z9	EnsemblPlants:CDY19134	ProteinID:CDY19134	ProteinID:CDY19134.1
InterPro:F-box-assoc_dom_typ3	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00006416001	InterPro:IPR001810	PFAM:PF00646	PFAM:PF08268	PFscan:PS50181
PANTHER:PTHR31790	PANTHER:PTHR31790:SF10	SMART:SM00256	SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI0004EDCD54

Description

BnaA04g18740DBnaA04g18740D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G0Z9]

Coordinates

chrLK032092:-:427173..428640

Molecular Weight (calculated)

43619.9 Da

IEP (calculated)

9.630

GRAVY (calculated)

-0.093

Length

382 amino acids

Sequence
(BLAST)

001: MSRRVTRSTT RLDRNSLTLP VEVVIEIFLR LPLKSIATCR CVCKLWSSLL RSQDFTDSFL TKSCARPQLL FACSDYRHEI HFLSSPQPEN PEDNSHVVAS
101: NHLARFPTSY GLFGCTNGFF CYGANQGKNK AVIVTVVCNP STGQSLTLPR LNSKERYRVE NYLGYDPVAK VFKVLSVFDG KEHHVLTLGT KKLSWRVVEC
201: SIPHYSSRKG ICISGVLYYI AAEPRSSSRE SMVVCFDLGT EKFSFVNLSR LKRALPQSTT LVNYNDRLGL LMASEDTSYV FRTCKRFKLW VLRDAAKHEW
301: SKHVYVLPPL WKDVVVDRMC IAGMVGVNEI VLAPWFQYVP SYVIYYNVES KTIRKVGIQG MEALQARRLN TYLNYVENVK LL

Best Arabidopsis Sequence Match ( AT2G31470.1 )
(BLAST)

001: MKSRRQNVSV ARQTILGRDE NFEPIPIDLV IEIFSRSPVK SIARCRCVSK LWASILRLPY FTELYLTKSC ARPRLLFACQ KHRELFFFST PQPHNPNESS
101: SPLAASFHMK IPFDGRFNII SPIGGLVFVR YEQILKGRKT PEFVSAICNP STGQSLTLPK PKTRKRIWGT SHFGYDPIEK QFKVLSMNIG DGVYKEHYVL
201: TLGTENLSWR RIECSIPHVH GSKGICINGV LYYRAKADMF SGTLMIVCFD VRFEKFSYIK ILKPTTTLIS YNGKLASLVW EGPSYICGKR FEMWVLGDPE
301: KHEWLKHTYE LRPRWQNVLG EDLLIFAGMT GTNEIVLSPK YPSHPFYVFY YNLERNTIRR VEIQGMGAFK VNEDYIFLDH VEDVKLI

Arabidopsis Description

DORF-box protein DOR [Source:UniProtKB/Swiss-Prot;Acc:Q5BPS3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.